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MS005095 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005095
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSNF1-related protein kinase regulatory subunit beta-3
Genome locationscaffold176:2664973..2665311
RNA-Seq ExpressionMS005095
SyntenyMS005095
Gene Ontology termsGO:0009744 - response to sucrose (biological process)
GO:0043562 - cellular response to nitrogen levels (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR006828 - Association with the SNF1 complex (ASC) domain
IPR030067 - SNF1-related protein kinase regulatory subunit beta-3
IPR037256 - ASC domain superfamily
IPR043554 - SNF1-related protein kinase regulatory subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145755.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus]6.2e-4989.81Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+Y+GSEDEARDPP  PPHLQHTLLS PASRDAG TLPLP NVILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

XP_022140750.1 SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia]1.5e-55100Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

XP_022958406.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata]3.6e-4990.57Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+YLGSED+ARDPP  PPHLQHTLLSHPASRDAGGTLPLP NV+LNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSS
        HRRGSS
Subjt:  HRRGSS

XP_022996167.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima]1.1e-4889.62Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+YLGSED+ARDPP  PPHLQHTLLSHPA RDAGGTLPLP NV+LNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSS
        HRRGSS
Subjt:  HRRGSS

XP_038902942.1 SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida]3.1e-4888.89Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQ TVVGFEVP SPDSTYNN+Y+GSEDEARDPP  PPHLQHTLLS PASRDAG TLPLP NVILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

TrEMBL top hitse value%identityAlignment
A0A0A0KBG3 AMPKBI domain-containing protein3.0e-4989.81Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+Y+GSEDEARDPP  PPHLQHTLLS PASRDAG TLPLP NVILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

A0A1S3CP39 SNF1-related protein kinase regulatory subunit beta-33.0e-4989.81Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+Y+GSEDEARDPP  PPHLQHTLLS PASRDAG TLPLP NVILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

A0A5A7T1A3 SNF1-related protein kinase regulatory subunit beta-3 isoform X23.0e-4989.81Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+Y+GSEDEARDPP  PPHLQHTLLS PASRDAG TLPLP NVILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

A0A6J1CG13 SNF1-related protein kinase regulatory subunit beta-37.4e-56100Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSSRA
        HRRGSSRA
Subjt:  HRRGSSRA

A0A6J1H1Z8 SNF1-related protein kinase regulatory subunit beta-3-like1.8e-4990.57Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        DQTTVVGFEVP SPDSTYNN+YLGSED+ARDPP  PPHLQHTLLSHPASRDAGGTLPLP NV+LNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSS
        HRRGSS
Subjt:  HRRGSS

SwissProt top hitse value%identityAlignment
Q6PAM0 5'-AMP-activated protein kinase subunit beta-23.8e-0936.84Show/hide
Query:  EVPNSPDSTY-NNLYL-GSEDEARDPPFAPPHLQHTLLSHPASRDAG-GTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        ++ +SP   Y   +Y+  SE+  + PP  PPHL   +L+   +       LP P++V+LNHLY  + +   SV+ L  THR++ K+VT +LYKP+
Subjt:  EVPNSPDSTY-NNLYL-GSEDEARDPPFAPPHLQHTLLSHPASRDAG-GTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Q84VQ1 SNF1-related protein kinase regulatory subunit beta-12.6e-1844.66Show/hide
Query:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKP
        ++  ++V FE P SPD +Y      +ED A++P   PP L  TLL    + +       P +V+LNH++IE   TP+S+VALG THRF SK++TVVLYKP
Subjt:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKP

Query:  VHR
        + R
Subjt:  VHR

Q9QZH4 5'-AMP-activated protein kinase subunit beta-21.0e-0937.89Show/hide
Query:  EVPNSPDSTY-NNLYL-GSEDEARDPPFAPPHLQHTLLSHPASRDAG-GTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        ++ +SP   Y   +Y+  SE+  + PP  PPHL   +L+   +       LP P++V+LNHLY     T  SV+ L  THR++ K+VT +LYKP+
Subjt:  EVPNSPDSTY-NNLYL-GSEDEARDPPFAPPHLQHTLLSHPASRDAG-GTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Q9SCY5 SNF1-related protein kinase regulatory subunit beta-26.5e-2553.85Show/hide
Query:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK
        +D  ++ GFE P SP+++Y+NL LG+ED +++PP  PPHLQ TLL+ PA+  D    LP P +VILNHLY++  ++  SVVALG THRF +K+VTVVLYK
Subjt:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK

Query:  PVHR
         + R
Subjt:  PVHR

Q9ZUU8 SNF1-related protein kinase regulatory subunit beta-34.0e-3566.98Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        + TTVVGFEVP SP S+YNN+Y  +EDE RDPP  PPHLQH+LL +  S +       P NV+LNHLYIENR+ PRSVVALGF+HRFR+KFVTVV+YKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSS
         RRGS+
Subjt:  HRRGSS

Arabidopsis top hitse value%identityAlignment
AT2G28060.1 5'-AMP-activated protein kinase beta-2 subunit protein2.9e-3666.98Show/hide
Query:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV
        + TTVVGFEVP SP S+YNN+Y  +EDE RDPP  PPHLQH+LL +  S +       P NV+LNHLYIENR+ PRSVVALGF+HRFR+KFVTVV+YKPV
Subjt:  DQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPV

Query:  HRRGSS
         RRGS+
Subjt:  HRRGSS

AT4G16360.1 5'-AMP-activated protein kinase beta-2 subunit protein4.6e-2653.85Show/hide
Query:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK
        +D  ++ GFE P SP+++Y+NL LG+ED +++PP  PPHLQ TLL+ PA+  D    LP P +VILNHLY++  ++  SVVALG THRF +K+VTVVLYK
Subjt:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK

Query:  PVHR
         + R
Subjt:  PVHR

AT4G16360.2 5'-AMP-activated protein kinase beta-2 subunit protein4.6e-2653.85Show/hide
Query:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK
        +D  ++ GFE P SP+++Y+NL LG+ED +++PP  PPHLQ TLL+ PA+  D    LP P +VILNHLY++  ++  SVVALG THRF +K+VTVVLYK
Subjt:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK

Query:  PVHR
         + R
Subjt:  PVHR

AT4G16360.3 5'-AMP-activated protein kinase beta-2 subunit protein4.6e-2653.85Show/hide
Query:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK
        +D  ++ GFE P SP+++Y+NL LG+ED +++PP  PPHLQ TLL+ PA+  D    LP P +VILNHLY++  ++  SVVALG THRF +K+VTVVLYK
Subjt:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASR-DAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYK

Query:  PVHR
         + R
Subjt:  PVHR

AT5G21170.1 5'-AMP-activated protein kinase beta-2 subunit protein1.9e-1944.66Show/hide
Query:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKP
        ++  ++V FE P SPD +Y      +ED A++P   PP L  TLL    + +       P +V+LNH++IE   TP+S+VALG THRF SK++TVVLYKP
Subjt:  QDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKP

Query:  VHR
        + R
Subjt:  VHR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTATCCTTTCTACAGGATCAAACCACTGTAGTCGGTTTTGAAGTTCCAAATTCACCGGATTCAACCTACAACAATCTGTACCTTGGGAGCGAAGACGAGGCACGTGATCC
ACCGTTTGCCCCGCCTCATTTGCAGCACACCTTACTGAGCCACCCAGCGAGCAGAGATGCTGGTGGAACTCTTCCATTGCCACACAATGTGATCCTCAACCATCTTTACA
TCGAAAACCGGGAGACTCCACGTTCTGTTGTGGCTCTCGGATTCACACATCGTTTTCGTTCAAAATTCGTCACGGTTGTGCTTTACAAACCGGTTCACAGAAGAGGAAGT
AGCAGGGCT
mRNA sequenceShow/hide mRNA sequence
GTATCCTTTCTACAGGATCAAACCACTGTAGTCGGTTTTGAAGTTCCAAATTCACCGGATTCAACCTACAACAATCTGTACCTTGGGAGCGAAGACGAGGCACGTGATCC
ACCGTTTGCCCCGCCTCATTTGCAGCACACCTTACTGAGCCACCCAGCGAGCAGAGATGCTGGTGGAACTCTTCCATTGCCACACAATGTGATCCTCAACCATCTTTACA
TCGAAAACCGGGAGACTCCACGTTCTGTTGTGGCTCTCGGATTCACACATCGTTTTCGTTCAAAATTCGTCACGGTTGTGCTTTACAAACCGGTTCACAGAAGAGGAAGT
AGCAGGGCT
Protein sequenceShow/hide protein sequence
VSFLQDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRDAGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPVHRRGS
SRA