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MS005098 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005098
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR50-like
Genome locationscaffold176:2678963..2679367
RNA-Seq ExpressionMS005098
SyntenyMS005098
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646889.1 hypothetical protein Csa_020692 [Cucumis sativus]2.5e-5786.57Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAK VT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE DY  GDD+S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCI
        FDHEGALTVPCRPSE+ERILAE+W EEEEE+GCI
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCI

XP_004145816.1 auxin-responsive protein SAUR50 [Cucumis sativus]1.3e-5886.67Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAK VT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE DY  GDD+S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW
        FDHEGALTVPCRPSE+ERILAE+W EEEEE+GCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW

XP_008465358.1 PREDICTED: auxin-responsive protein SAUR32-like [Cucumis melo]1.6e-5685.4Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAKLVT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE D E GDD S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEE--EESGCIW
        F+HEGALTVPCRPSE+ERILAE+W EEE  EE+GCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEE--EESGCIW

XP_022140427.1 auxin-responsive protein SAUR50-like [Momordica charantia]1.2e-6798.52Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNAS DEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW
        FDHEGALTVPCRPSEMERILAEQW EEEEESGCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW

XP_038902788.1 auxin-responsive protein SAUR50-like [Benincasa hispida]1.0e-5888.15Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAKLVT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE DYE GDD+S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW
        FDHEGALTVPCRPSE+ERILAE+W EEEEE+GCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW

TrEMBL top hitse value%identityAlignment
A0A0A0KGI2 Uncharacterized protein6.5e-5986.67Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAK VT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE DY  GDD+S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW
        FDHEGALTVPCRPSE+ERILAE+W EEEEE+GCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW

A0A1S3CNL2 auxin-responsive protein SAUR32-like8.0e-5785.4Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAKLVT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE D E GDD S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEE--EESGCIW
        F+HEGALTVPCRPSE+ERILAE+W EEE  EE+GCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEE--EESGCIW

A0A5D3DFC2 Auxin-responsive protein SAUR32-like8.0e-5785.4Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAKLVT AKKKNGIVKLKTAVGKLQRSLSLGRRS++ QDE D E GDD S T VP D+KEGHFAVVAVDAEEPKRFV PLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEE--EESGCIW
        F+HEGALTVPCRPSE+ERILAE+W EEE  EE+GCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEE--EESGCIW

A0A6J1CGW5 auxin-responsive protein SAUR50-like5.9e-6898.52Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
        MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNAS DEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYG

Query:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW
        FDHEGALTVPCRPSEMERILAEQW EEEEESGCIW
Subjt:  FDHEGALTVPCRPSEMERILAEQWAEEEEESGCIW

A0A6J1H360 auxin-responsive protein SAUR50-like5.5e-5084Show/hide
Query:  KKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTV
        KKNGIVKLKTAVG+LQRSLSLGRRSN+   EFD+E GDDDS T VP D+KEGHFAVVAVDAEEPKRFV PLSCL NPTFLRLLEAAAEEYGFDHEGALT+
Subjt:  KKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTV

Query:  PCRPSEMERILAEQWAEEEE-ESGC
        PCRPSE+ERILAE+W EEEE E+ C
Subjt:  PCRPSEMERILAEQWAEEEE-ESGC

SwissProt top hitse value%identityAlignment
O65695 Auxin-responsive protein SAUR505.4e-1038.64Show/hide
Query:  LQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPC
        L+R  SLG+++    DE             +P D+ +GHF V     E   R++ P+S LT+P F  LL+ A EE+GFDH+  LT+PC
Subjt:  LQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPC

P0DKL1 Auxin-responsive protein SAUR501.2e-0942.42Show/hide
Query:  DDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCR
        +DDSG  +P D+ +GHF V     E   R++ P+SCL +PTF  LL+ + EE+GF+H+  + +PC+
Subjt:  DDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCR

P33079 Auxin-induced protein 10A59.5e-0740.91Show/hide
Query:  DIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHE-GALTVPCRPSEMERILA
        D+ +G+ AV   D  + +RF  P+S L  P+F  LL  A EE+G+DH  G LT+PC+  E   + A
Subjt:  DIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHE-GALTVPCRPSEMERILA

P33082 Auxin-induced protein X159.5e-0743.75Show/hide
Query:  DIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHE-GALTVPCRPSEMERI
        D  +G+ AV     E+ KRFV P+S +  P+F  LL  A EE+G+DH  G LT+PC     +RI
Subjt:  DIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHE-GALTVPCRPSEMERI

Q9ZUZ3 Auxin-responsive protein SAUR325.0e-0837.88Show/hide
Query:  DIKEGHFAV-VAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSEMERILA
        D+ +G  A+ V    EE +RF+ P+    +P F++LL+ A +EYGFD +G +T+PC   E   + A
Subjt:  DIKEGHFAV-VAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSEMERILA

Arabidopsis top hitse value%identityAlignment
AT1G19830.1 SAUR-like auxin-responsive protein family5.0e-1139.77Show/hide
Query:  LQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPC
        L+R  SLG++ ++     +Y    +  G S+P D+ +GHF V         R+V P+S LT P F  LL+ A EE+GFDH   LT+PC
Subjt:  LQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPC

AT1G75580.1 SAUR-like auxin-responsive protein family3.2e-1036.89Show/hide
Query:  KKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALT
        KK N + +       L+R  SLG++ +          G+D++G+  P ++ +GHF V     E   R+V P+S LT P F  LL+ A EE+GFDH+  LT
Subjt:  KKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALT

Query:  VPC
        +PC
Subjt:  VPC

AT2G28085.1 SAUR-like auxin-responsive protein family2.2e-2246.03Show/hide
Query:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDA--EEPKRFVAPLSCLTNPTFLRLLEAAAEE
        M  + +  KK  GIVKLK  V +L +            +E+  +         VP D+KEGHFAV+AVD   E  +RFV PL  L +P F +LLE A EE
Subjt:  MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDA--EEPKRFVAPLSCLTNPTFLRLLEAAAEE

Query:  YGFDHEGALTVPCRPSEMERILAEQW
        YGF H+GAL VPCRPS +  IL EQW
Subjt:  YGFDHEGALTVPCRPSEMERILAEQW

AT3G09870.1 SAUR-like auxin-responsive protein family6.1e-1743.81Show/hide
Query:  KLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSE
        K K  + KLQ      R S    +  ++E  + ++ + +P D+KEGH AV+AV  E  KRFV  L  L  P FLRLLE A EE+GF   G LT+PC+P E
Subjt:  KLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSE

Query:  MERIL
        +++IL
Subjt:  MERIL

AT4G34760.1 SAUR-like auxin-responsive protein family3.8e-1138.64Show/hide
Query:  LQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPC
        L+R  SLG+++    DE             +P D+ +GHF V     E   R++ P+S LT+P F  LL+ A EE+GFDH+  LT+PC
Subjt:  LQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGCTTGTCACCAACGCCAAGAAAAAGAATGGCATTGTGAAGCTCAAGACCGCTGTGGGGAAGCTGCAAAGAAGCCTTTCATTAGGTCGAAGGTCCAATGCTAG
CCAAGATGAGTTCGACTACGAAGCCGGTGATGACGACTCTGGTACTTCGGTACCGGGAGACATCAAGGAAGGCCATTTTGCGGTCGTGGCCGTCGATGCCGAGGAGCCGA
AGCGATTCGTCGCCCCGTTGAGTTGTTTGACCAACCCGACGTTTTTGAGGCTGCTGGAGGCGGCGGCGGAGGAGTATGGATTCGATCACGAGGGAGCGCTGACGGTGCCG
TGCCGGCCGAGCGAGATGGAGAGGATCTTGGCGGAGCAATGGGCGGAGGAGGAGGAGGAGAGCGGCTGCATTTGG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGCTTGTCACCAACGCCAAGAAAAAGAATGGCATTGTGAAGCTCAAGACCGCTGTGGGGAAGCTGCAAAGAAGCCTTTCATTAGGTCGAAGGTCCAATGCTAG
CCAAGATGAGTTCGACTACGAAGCCGGTGATGACGACTCTGGTACTTCGGTACCGGGAGACATCAAGGAAGGCCATTTTGCGGTCGTGGCCGTCGATGCCGAGGAGCCGA
AGCGATTCGTCGCCCCGTTGAGTTGTTTGACCAACCCGACGTTTTTGAGGCTGCTGGAGGCGGCGGCGGAGGAGTATGGATTCGATCACGAGGGAGCGCTGACGGTGCCG
TGCCGGCCGAGCGAGATGGAGAGGATCTTGGCGGAGCAATGGGCGGAGGAGGAGGAGGAGAGCGGCTGCATTTGG
Protein sequenceShow/hide protein sequence
MAKLVTNAKKKNGIVKLKTAVGKLQRSLSLGRRSNASQDEFDYEAGDDDSGTSVPGDIKEGHFAVVAVDAEEPKRFVAPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVP
CRPSEMERILAEQWAEEEEESGCIW