CuGenDBv2

Gene ID	MS005100
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L18
Genome location	scaffold176:2688072..2688455
RNA-Seq Expression	MS005100
Synteny	MS005100
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022140774.1 uncharacterized protein LOC111011356 [Momordica charantia]

2.9e-63

100

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSLRNGGVKLILDDNVDGASRPGYQ
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]

3.5e-56

89.84

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSL+N GVKLILD+N D ASRP Y+
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]

1.7e-55

89.06

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSL+N GVKLILD+N D A RP Y+
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]

2.7e-56

90.62

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DVNKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSL+N GVKLILD+N D ASRP Y+
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]

2.0e-56

91.41

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DVNKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVN+L+N GVKLILD+NVD ASR  YQ
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

TrEMBL top hits

e value

%identity

Alignment

A0A1R3KXD1 Ribosomal protein L18/L5

5.4e-55

85.83

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYVLRLF+SLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAA +VGEVLAMRLKV+GLEQGQGRGIHVDVNKE+EKKG KN TK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGY
        A+VN+L+N GVK+IL+DN DG SRPGY
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGY

A0A6J1CGQ4 uncharacterized protein LOC111011356

1.4e-63

100

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSLRNGGVKLILDDNVDGASRPGYQ
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

A0A6J1FXG0 uncharacterized protein LOC111448460

1.7e-56

89.84

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSL+N GVKLILD+N D ASRP Y+
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

A0A6J1JBQ5 uncharacterized protein LOC111483610

8.3e-56

89.06

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGYQ
        AIVNSL+N GVKLILD+N D A RP Y+
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGYQ

A0A6P3ZI60 uncharacterized protein LOC107411474

5.4e-55

88.98

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVGEVLAMRLKV+GLEQGQGRGIHVDVNKE+EKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVDGASRPGY
        AIVNSL+N GVKLILDDN + +SRP Y
Subjt:  AIVNSLRNGGVKLILDDNVDGASRPGY

SwissProt top hits

e value

%identity

Alignment

A9M3V0 50S ribosomal protein L18

7.1e-04

39.44

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Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ
        LK   L +F S  +I A V+     +V+A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ

Q5F5U3 50S ribosomal protein L18

7.1e-04

39.44

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Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ
        LK   L +F S  +I A V+     +V+A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ

Q5P316 50S ribosomal protein L18

8.4e-05

32.11

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Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIV
        LK   L +F +  +I A V+D +  RV+A ASTVE  ++  L  G   N +AA VVG+++A R K  G+E               ++ G +   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIV

Query:  NSLRNGGVK
         + R GG+K
Subjt:  NSLRNGGVK

Q7DDT0 50S ribosomal protein L18

7.1e-04

39.44

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Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ
        LK   L +F S  +I A V+     +V+A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ

Q9JQQ6 50S ribosomal protein L18

7.1e-04

39.44

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Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ
        LK   L +F S  +I A V+     +V+A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G45020.1 Ribosomal L18p/L5e family protein

2.7e-51

80.83

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGR+V TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIH DV KEIEKKG K+ TK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIW

Query:  AIVNSLRNGGVKLILDDNVD
        A++NSLRN GV LILDD+ D
Subjt:  AIVNSLRNGGVKLILDDNVD

AT5G27820.1 Ribosomal L18p/L5e family protein

6.6e-05

27.03

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Query:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIV
        LK YVL++  + K++ A V+      V  +AS+ E +++ +++  R  +  AA+ +G++L  RL +  +       + + + KE    G     K+ A++
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIV

Query:  NSLRNGGVKLI
        +S+R  GVKL+
Subjt:  NSLRNGGVKLI

Sequences

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CDS sequence

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ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCGAATGTGGTAGATAGAAATAATGGACGAGTTGTGGCAACTGCGTCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCCAAAGCAGCAGCAGTTGTTGGAGAGGTGCTGGCTATGCGACTCAAAGTCGACGGTCTTGAAC
AGGGGCAAGGACGAGGAATTCACGTGGACGTAAATAAGGAAATTGAGAAAAAAGGCTTAAAAAACTGCACAAAAATCTGGGCTATTGTCAACTCTCTTAGGAATGGTGGA
GTTAAGCTTATTCTCGACGACAATGTTGATGGTGCATCTAGGCCAGGTTATCAG

mRNA sequence

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Protein sequence

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MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIVNSLRNGG
VKLILDDNVDGASRPGYQ

MS005100 (gene) of Bitter gourd (TR) v1 genome