CuGenDBv2

Gene ID	MS005105
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	scaffold176:2717345..2718275
RNA-Seq Expression	MS005105
Synteny	MS005105
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]

1.4e-83

100

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

2.2e-76

90.38

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LP NP  SLCKFCNFNAFNPG SSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAE  SEILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

2.2e-76

90.38

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LP NP  SLCKFCNFNAFNPG SSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAE  SEILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

1.4e-75

90.38

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LP NP  SLCKFCNFNAFNP  SSSKR+FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAE  SEILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

3.9e-78

92.31

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LPDNPSSS+CKFCNFNAFNP  SSSKR+FRLLMSIATD+KVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAET SEILEGEMFR+TISKPKNGNAQHSRVVQVVPLSSGFQPAI RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CNQ4 uncharacterized protein LOC103503028

6.3e-74

87.82

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMC V+AMD+++FCYRVCSICER+LP NPSSSLCKFCNFNAFNPG SSSKR+FRLLMSIATDK+VQTVICFDR A+VLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAET SEIL GEMFR+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

A0A6J1CHW5 uncharacterized protein LOC111011075

6.8e-84

100

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

1.0e-76

90.38

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LP NP  SLCKFCNFNAFNPG SSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAE  SEILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

1.0e-76

90.38

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LP NP  SLCKFCNFNAFNPG SSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAE  SEILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

1.2e-75

89.74

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Query:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDK ITTMC V+AMDH+SFCYRVCSICER+LP NP  SLCKFCNFNAFNPG SSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG
        HPFAAE  SEILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.7e-42

57.62

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Query:  TTMCGVVAMDHSSFCYRVCSICERSLP-DN---PSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF
        T +C ++A+D + +CYRVCS C+R LP DN    SSS CKFC            K L+R+LMSIATD  V+TVICFDRAA VLFGCSADEFF F KL+P 
Subjt:  TTMCGVVAMDHSSFCYRVCSICERSLP-DN---PSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF

Query:  AAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLREL
        AA   +++ +GEM RMT+++P+N NAQH RV  VVPL SG QPAIV LR++
Subjt:  AAETASEILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLREL

Sequences

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CDS sequence

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ATGGAAAATGATAAGCCAATTACAACAATGTGCGGAGTGGTAGCGATGGATCACAGCAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGGTCTCTCCCCGACAACCC
CTCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTTCTCCTCCTCCAAACGCCTCTTTCGTCTCCTTATGTCAATTGCTACGGATAAGAAGGTGC
AAACTGTAATATGCTTCGATAGGGCCGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTTCATCCTTTTGCTGCTGAAACTGCAAGTGAA
ATTTTGGAGGGAGAGATGTTTAGAATGACAATCTCTAAACCCAAGAATGGCAATGCACAACACTCTAGAGTTGTACAAGTTGTTCCTCTGAGTTCTGGTTTTCAACCAGC
AATTGTGAGACTGAGGGAATTGTATGGG

mRNA sequence

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Protein sequence

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MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETASE
ILEGEMFRMTISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLRELYG

MS005105 (gene) of Bitter gourd (TR) v1 genome