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MS005110 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005110
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChromodomain helicase DNA binding protein
Genome locationscaffold176:2776351..2776484
RNA-Seq ExpressionMS005110
SyntenyMS005110
Gene Ontology termsGO:0016746 - transferase activity, transferring acyl groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143217.1 uncharacterized protein LOC101206451 isoform X1 [Cucumis sativus]6.0e-0863.27Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
XP_011657123.1 uncharacterized protein LOC101206451 isoform X3 [Cucumis sativus]6.0e-0863.27Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
XP_031743821.1 uncharacterized protein LOC101206451 isoform X2 [Cucumis sativus]6.0e-0863.27Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
XP_038900523.1 uncharacterized protein LOC120087720 isoform X1 [Benincasa hispida]1.7e-0761.22Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +VNYQDAW   VIF       +R++ FP LGDEL VGIET+RIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
XP_038900525.1 uncharacterized protein LOC120087720 isoform X3 [Benincasa hispida]1.7e-0761.22Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +VNYQDAW   VIF       +R++ FP LGDEL VGIET+RIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
TrEMBL top hitse value%identityAlignment
A0A0A0KC42 Uncharacterized protein2.9e-0863.27Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
A0A6J1G7J3 uncharacterized protein LOC111451473 isoform X15.5e-0767.35Show/hide
Query:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
        YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Subjt:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
A0A6J1L1Q7 uncharacterized protein LOC111499614 isoform X25.5e-0767.35Show/hide
Query:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
        YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Subjt:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
A0A6J1L3P4 uncharacterized protein LOC111499614 isoform X15.5e-0767.35Show/hide
Query:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
        YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Subjt:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
A0A6J1L6G8 uncharacterized protein LOC111499614 isoform X55.5e-0767.35Show/hide
Query:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
        YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Subjt:  YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G58610.1 PHD finger transcription factor, putative3.8e-0848.98Show/hide
Query:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT
        YGLC +V + DAW   V+F       +RR+ FP LGDELD  +++LRIT
Subjt:  YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGGACTGTGTTTTAATGTGAATTACCAGGATGCATGGTCGGGAGCTGTTATTTTTGGTTCTCAAAGGAGGATTCTCTTCCCGAAATTGGGCGATGAATTGGATGTTGG
AATTGAAACATTGCGTATTACC
mRNA sequenceShow/hide mRNA sequence
TATGGACTGTGTTTTAATGTGAATTACCAGGATGCATGGTCGGGAGCTGTTATTTTTGGTTCTCAAAGGAGGATTCTCTTCCCGAAATTGGGCGATGAATTGGATGTTGG
AATTGAAACATTGCGTATTACC
Protein sequenceShow/hide protein sequence
YGLCFNVNYQDAWSGAVIFGSQRRILFPKLGDELDVGIETLRIT