; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005140 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005140
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhistone deacetylase HDT1-like
Genome locationscaffold176:2993665..2994388
RNA-Seq ExpressionMS005140
SyntenyMS005140
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606012.1 Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia]1.8e-4086.49Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDDEDD TESDEETPKKVE+TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHTATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D AL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGG+
Subjt:  QSHSKAKHGGK

KAG7035961.1 Histone deacetylase HDT1 [Cucurbita argyrosperma subsp. argyrosperma]6.7e-4085.59Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDDEDD TESDEETPKKVE+TKKR +ESASK TPLPAKKAKL SPEKTDSKKGGHTATPHP KK+AKTP KS++PKSGGQFSCK C++SFG+D AL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

XP_022140695.1 histone deacetylase HDT1-like [Momordica charantia]3.9e-4899.1Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDDEDDGTESDEETPKKVESTKKRLNESASK TPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

XP_022958436.1 histone deacetylase HDT1-like [Cucurbita moschata]1.4e-4087.39Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDDEDD TESDEETPKKVE TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHTATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D AL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

XP_022996072.1 histone deacetylase HDT1-like [Cucurbita maxima]5.2e-4086.49Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDD DD TESDEETPKKVE+TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHTATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D AL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

TrEMBL top hitse value%identityAlignment
A0A6J1CFU4 histone deacetylase HDT1-like1.9e-4899.1Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDDEDDGTESDEETPKKVESTKKRLNESASK TPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

A0A6J1FU30 histone deacetylase HDT1-like2.9e-3680.36Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTP-TKSESPKSGGQFSCKPCNKSFGTDKA
        DS DSDDEDD ++SDEETPKK+E TKKR NESA+K TPLPAKKAKL SP KTDSKKGGHTATPHPAKK+ KTP  K ESPKSGGQFSCK C+++FG+D A
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTP-TKSESPKSGGQFSCKPCNKSFGTDKA

Query:  LQSHSKAKHGGK
        LQSHSKAKHGGK
Subjt:  LQSHSKAKHGGK

A0A6J1H225 histone deacetylase HDT1-like6.6e-4187.39Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDDEDD TESDEETPKKVE TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHTATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D AL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

A0A6J1JAV1 histone deacetylase HDT1-like2.2e-3680.36Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTP-TKSESPKSGGQFSCKPCNKSFGTDKA
        DS DSDDEDD ++SDEETPKK+E TKKR NESA+K TPLPAKKAKL SP KTDSKKGGHTATPHPAKK+ KTP  K ESPKSGGQFSCK C+++FG+D A
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTP-TKSESPKSGGQFSCKPCNKSFGTDKA

Query:  LQSHSKAKHGGK
        LQSHSKAKHGGK
Subjt:  LQSHSKAKHGGK

A0A6J1K0W9 histone deacetylase HDT1-like2.5e-4086.49Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL
        DSSDSDD DD TESDEETPKKVE+TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHTATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D AL
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKAL

Query:  QSHSKAKHGGK
        QSHSKAKHGGK
Subjt:  QSHSKAKHGGK

SwissProt top hitse value%identityAlignment
O24591 Histone deacetylase HDT15.4e-1652.89Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSP--EKTDSKKGG--HTATPHPAK--------KSAKTPTKSESPKSGGQFSCK
        DSSD DD  D  E D  TPKK E  KKR  ES+   TPL  KKAK+ +P  +KT  KKG   H ATPHPAK        KS K+P    +PKSGG   CK
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSP--EKTDSKKGG--HTATPHPAK--------KSAKTPTKSESPKSGGQFSCK

Query:  PCNKSFGTDKALQSHSKAKHG
        PC+KSF ++ ALQ+HS+AK G
Subjt:  PCNKSFGTDKALQSHSKAKHG

Q6V9I6 Histone deacetylase HDT11.5e-2158.72Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKK-GGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKA
        DS   +DEDD  +S+EETPKK E  K+R  +SA+K TP+  KKAKL +P+KTD KK GGH ATPHP+K+++KT      PKS G   CKPCN+SFG++ A
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKK-GGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKA

Query:  LQSHSKAKH
        L SHSKAKH
Subjt:  LQSHSKAKH

Q8LJS2 Histone deacetylase HDT16.6e-2259.65Show/hide
Query:  DSSDSDDEDDGTESDEETP-KKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTP--TKSESPKSGGQFSCKPCNKSFGTD
        D S+S++E DG   DEETP KKV+  KKR NESA+K TP+ AKKAK  +PEKTD KK  H ATPHP+KK  KTP  TK ++P S GQ SC  C KSF  +
Subjt:  DSSDSDDEDDGTESDEETP-KKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTP--TKSESPKSGGQFSCKPCNKSFGTD

Query:  KALQSHSKAKHGGK
          LQ H KAKHGG+
Subjt:  KALQSHSKAKHGGK

Q9LZR5 Histone deacetylase HDT31.6e-1546.61Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGG-HTATPHPAKKSAK---------TPTKSESPKSGGQFSCKPC
        +  DS D+++   S+EETPKK E  KKR  E  S   P   KKAK V+P+KTDSKK   H ATPHP+K++ K         T  + ++PKS G F CK C
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGG-HTATPHPAKKSAK---------TPTKSESPKSGGQFSCKPC

Query:  NKSFGTDKALQSHSKAKH
         ++F ++  LQSH+KAKH
Subjt:  NKSFGTDKALQSHSKAKH

Q9M4U4 Histone deacetylase HDT36.0e-1552.85Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSP--EKTDSKKGG--HTATPHPAK--------KSAKTPTKSESPKSGGQFSCK
        DSSD DD  D  E D  TPKK E  KKR  ES+   TPL  KKAK+ +P  +KT  KKG   H ATPHPAK        KS K+P    +PKSG    CK
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSP--EKTDSKKGG--HTATPHPAK--------KSAKTPTKSESPKSGGQFSCK

Query:  PCNKSFGTDKALQSHSKAKHGGK
         C+KSF ++ A Q+HSKAKHGGK
Subjt:  PCNKSFGTDKALQSHSKAKHGGK

Arabidopsis top hitse value%identityAlignment
AT3G44750.1 histone deacetylase 36.3e-1247.83Show/hide
Query:  DSSDSD----DEDDGTESDEE--TPKKVESTKKRLNESASKMTPLPAKKAKL-VSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKS
        D SDSD    D+ DG +S+EE  TPKK  S+KKR NE+  K  P+ AKKAK+ V+P+KTD KK G  A              ++SPKS  Q SC  C K+
Subjt:  DSSDSD----DEDDGTESDEE--TPKKVESTKKRLNESASKMTPLPAKKAKL-VSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKS

Query:  FGTDKALQSHSKAKH
        F +  AL+SH+KAKH
Subjt:  FGTDKALQSHSKAKH

AT3G44750.2 histone deacetylase 36.3e-1247.83Show/hide
Query:  DSSDSD----DEDDGTESDEE--TPKKVESTKKRLNESASKMTPLPAKKAKL-VSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKS
        D SDSD    D+ DG +S+EE  TPKK  S+KKR NE+  K  P+ AKKAK+ V+P+KTD KK G  A              ++SPKS  Q SC  C K+
Subjt:  DSSDSD----DEDDGTESDEE--TPKKVESTKKRLNESASKMTPLPAKKAKL-VSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKS

Query:  FGTDKALQSHSKAKH
        F +  AL+SH+KAKH
Subjt:  FGTDKALQSHSKAKH

AT5G03740.1 histone deacetylase 2C1.1e-1646.61Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGG-HTATPHPAKKSAK---------TPTKSESPKSGGQFSCKPC
        +  DS D+++   S+EETPKK E  KKR  E  S   P   KKAK V+P+KTDSKK   H ATPHP+K++ K         T  + ++PKS G F CK C
Subjt:  DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGG-HTATPHPAKKSAK---------TPTKSESPKSGGQFSCKPC

Query:  NKSFGTDKALQSHSKAKH
         ++F ++  LQSH+KAKH
Subjt:  NKSFGTDKALQSHSKAKH

AT5G22650.1 histone deacetylase 2B3.7e-1251.24Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVES-TKKRLNESASKMTPLPAKKAK-----LVSPEKT-DSKKGGHTATPHPAKKSAKTPTK-SESPKSGGQFSCKPCNK
        DS D ++ED   E +EETPKK E   KKR NES SK TP+  KKAK       +P+KT + KKGGHTATPHPAKK  K+P   ++SPKSGGQ S    NK
Subjt:  DSSDSDDEDDGTESDEETPKKVES-TKKRLNESASKMTPLPAKKAK-----LVSPEKT-DSKKGGHTATPHPAKKSAKTPTK-SESPKSGGQFSCKPCNK

Query:  S-FGTDKAL-QSHSKAKHGGK
          F + K    S++K  + GK
Subjt:  S-FGTDKAL-QSHSKAKHGGK

AT5G22650.2 histone deacetylase 2B1.5e-1351.67Show/hide
Query:  DSSDSDDEDDGTESDEETPKKVES-TKKRLNESASKMTPLPAKKAK-----LVSPEKTDSKKGGHTATPHPAKKSAKTPTK-SESPKSGGQFSCKPCNKS
        DS D ++ED   E +EETPKK E   KKR NES SK TP+  KKAK       +P+KT+ KKGGHTATPHPAKK  K+P   ++SPKSGGQ S    NK 
Subjt:  DSSDSDDEDDGTESDEETPKKVES-TKKRLNESASKMTPLPAKKAK-----LVSPEKTDSKKGGHTATPHPAKKSAKTPTK-SESPKSGGQFSCKPCNKS

Query:  -FGTDKAL-QSHSKAKHGGK
         F + K    S++K  + GK
Subjt:  -FGTDKAL-QSHSKAKHGGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACAGTAGCGACTCTGATGATGAAGATGATGGTACTGAAAGTGATGAGGAGACACCAAAGAAGGTTGAATCAACCAAGAAGAGGTTGAATGAGTCTGCCTCCAAGATGAC
TCCCCTTCCTGCTAAGAAGGCAAAGCTAGTTTCGCCTGAGAAGACTGATTCGAAGAAGGGTGGCCATACAGCTACTCCCCACCCTGCCAAGAAGTCTGCTAAAACTCCTA
CTAAGTCAGAGAGCCCAAAATCTGGTGGCCAGTTCTCTTGCAAACCCTGCAACAAGTCATTTGGTACGGATAAGGCACTTCAGTCACACAGTAAGGCTAAGCATGGGGGT
AAG
mRNA sequenceShow/hide mRNA sequence
GACAGTAGCGACTCTGATGATGAAGATGATGGTACTGAAAGTGATGAGGAGACACCAAAGAAGGTTGAATCAACCAAGAAGAGGTTGAATGAGTCTGCCTCCAAGATGAC
TCCCCTTCCTGCTAAGAAGGCAAAGCTAGTTTCGCCTGAGAAGACTGATTCGAAGAAGGGTGGCCATACAGCTACTCCCCACCCTGCCAAGAAGTCTGCTAAAACTCCTA
CTAAGTCAGAGAGCCCAAAATCTGGTGGCCAGTTCTCTTGCAAACCCTGCAACAAGTCATTTGGTACGGATAAGGCACTTCAGTCACACAGTAAGGCTAAGCATGGGGGT
AAG
Protein sequenceShow/hide protein sequence
DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGG
K