; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005142 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005142
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhistone deacetylase HDT1-like
Genome locationscaffold176:3003093..3003534
RNA-Seq ExpressionMS005142
SyntenyMS005142
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsIPR041232 - Nucleoplasmin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570843.1 Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4494.85Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

XP_022140604.1 histone deacetylase HDT1-like [Momordica charantia]4.8e-46100Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

XP_022943360.1 histone deacetylase HDT1-like [Cucurbita moschata]1.5e-4494.85Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

XP_022986356.1 histone deacetylase HDT1-like [Cucurbita maxima]1.3e-4393.81Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVK GQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

XP_023513046.1 histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]1.5e-4494.85Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

TrEMBL top hitse value%identityAlignment
A0A6J1CG52 histone deacetylase HDT1-like2.3e-46100Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

A0A6J1FU30 histone deacetylase HDT1-like1.3e-4189.8Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQ
        GVEVK G+ L VKPG QKYLHLSQATLGEIKKDKANE+VTIFLKIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGS+YC GYQA AEDQEQ
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQ

A0A6J1FXQ5 histone deacetylase HDT1-like7.4e-4594.85Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

A0A6J1H533 histone deacetylase HDT1-like4.1e-4391.75Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVKPGQAL+VKPGDQKYLHLSQATLGE+KKDK+ ESVTIFLKI +QKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYC+GYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

A0A6J1JAV6 histone deacetylase HDT1-like6.3e-4493.81Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVK GQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

SwissProt top hitse value%identityAlignment
O24591 Histone deacetylase HDT15.2e-1947.42Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        G+EVKPG  +  +PG    LHLSQA LGE KK   +++  +++KI DQKL +G LS +K P + FDL+F+KEFELSH  K+ S++  GY+     +E
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

Q6V9I6 Histone deacetylase HDT11.4e-2458.16Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQ
        G EVK G+ L V+PGD   LHLSQA+LGE+KKDK +ESV + + I  +KLVLG L++EK PQ  FDLVF+++FELSHN KSGS+Y  GY+A+   +E+
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQ

Q8LJS2 Histone deacetylase HDT14.2e-2153.26Show/hide
Query:  GVEVKPGQALAVKPGD--QKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQ
        GVEVK GQ + V P D    Y+H+SQ  LGE KKDK NE V ++LK+G+QK+VLG LS +  P LS DLV + + ELSH  KS S++  GY+
Subjt:  GVEVKPGQALAVKPGD--QKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQ

Q9FVE6 Histone deacetylase HDT15.2e-1945.95Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------S
        G+EVK G+ + V P +   +H+SQA+LGE  K+K  E V + +K+G+Q LVLG LS E  PQL  DLVF+KEFELSH    GS+Y +GY+         S
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------S

Query:  AEDQEQYPSFP
         E++E+    P
Subjt:  AEDQEQYPSFP

Q9M4U5 Histone deacetylase HDT26.1e-2042.61Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA---------
        G+EVKPG  +  +PG    LH+SQA LGE KK   ++S  +++K+ D+KL +G LS +K+PQ+ FDLVF KEFELSH  K+ S++  GY+          
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA---------

Query:  --SAEDQEQYPSFPI
           +ED+E+  + P+
Subjt:  --SAEDQEQYPSFPI

Arabidopsis top hitse value%identityAlignment
AT3G44750.1 histone deacetylase 33.7e-2045.95Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------S
        G+EVK G+ + V P +   +H+SQA+LGE  K+K  E V + +K+G+Q LVLG LS E  PQL  DLVF+KEFELSH    GS+Y +GY+         S
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------S

Query:  AEDQEQYPSFP
         E++E+    P
Subjt:  AEDQEQYPSFP

AT3G44750.2 histone deacetylase 31.3e-2046.79Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------S
        G+EVK G+ + V P +   +H+SQA+LGE  K+K  E V + +K+G+Q LVLG LS E  PQL  DLVF+KEFELSH    GS+Y +GY+         S
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------S

Query:  AEDQEQYPS
         E++E+ P+
Subjt:  AEDQEQYPS

AT5G03740.1 histone deacetylase 2C1.4e-1945.36Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
        GVEVK G+ L + PG  + +H+SQ  LGE  K+   E + +++ +G  KL++G LS EKFPQLS ++V E+ F LSH  K+GS++  GY+  A D E
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE

AT5G22650.1 histone deacetylase 2B6.9e-1944.55Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYP
        GV V P  A  V P +   +H+SQA+L      K+ ESV + + +G  KLV+G LS +KFPQ+SFDLVF+KEFELSH+G   +++ +GY++   +Q+ + 
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYP

Query:  S
        S
Subjt:  S

AT5G22650.2 histone deacetylase 2B6.9e-1944.55Show/hide
Query:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYP
        GV V P  A  V P +   +H+SQA+L      K+ ESV + + +G  KLV+G LS +KFPQ+SFDLVF+KEFELSH+G   +++ +GY++   +Q+ + 
Subjt:  GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYP

Query:  S
        S
Subjt:  S


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTTTGGATTTCAGGTGTTGAAGTTAAGCCTGGTCAGGCACTCGCCGTGAAGCCTGGAGATCAAAAATATTTGCATCTATCACAGGCGACTCTAGGTGAAATAAA
GAAGGACAAAGCTAATGAATCCGTGACTATTTTTCTGAAGATTGGTGACCAAAAGCTTGTTCTGGGAGTTCTCTCCGCTGAGAAGTTCCCGCAGCTATCATTTGATCTTG
TGTTTGAGAAGGAATTTGAGCTCTCCCACAACGGGAAGAGTGGAAGTATTTACTGTTTGGGGTACCAGGCTTCTGCTGAGGACCAAGAACAATATCCTTCCTTTCCAATT
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTTTGGATTTCAGGTGTTGAAGTTAAGCCTGGTCAGGCACTCGCCGTGAAGCCTGGAGATCAAAAATATTTGCATCTATCACAGGCGACTCTAGGTGAAATAAA
GAAGGACAAAGCTAATGAATCCGTGACTATTTTTCTGAAGATTGGTGACCAAAAGCTTGTTCTGGGAGTTCTCTCCGCTGAGAAGTTCCCGCAGCTATCATTTGATCTTG
TGTTTGAGAAGGAATTTGAGCTCTCCCACAACGGGAAGAGTGGAAGTATTTACTGTTTGGGGTACCAGGCTTCTGCTGAGGACCAAGAACAATATCCTTCCTTTCCAATT
Protein sequenceShow/hide protein sequence
MFLWISGVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYPSFPI