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MS005148 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005148
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc finger and BTB domain-containing protein 47
Genome locationscaffold176:3054916..3055184
RNA-Seq ExpressionMS005148
SyntenyMS005148
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065239.1 zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa]4.5e-1058.51Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFKSNHRGT-ESVQHRKRGRPRKI-DEAQNEEKNEELSP-----SEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE
        KKK QKTKEIAVAIA+TST K    G  +S+Q RKRGRPRK+ DE QNE++N++L P      EV + PPE K+K T DE PPP +V+ G KQE
Subjt:  KKKIQKTKEIAVAIAKTSTFKSNHRGT-ESVQHRKRGRPRKI-DEAQNEEKNEELSP-----SEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE

KAG6598438.1 hypothetical protein SDJN03_08216, partial [Cucurbita argyrosperma subsp. sororia]2.7e-0748.42Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFKS-NHRGTESVQHRKRGRPRKI-DEAQNEEKNEEL------SPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE
        KKK QKTKEI  AI +TS  KS +    +S+Q RKRGRPRK+ DE QN++ N+EL       P  V+  PPE K KTT D++PPP + +  +++E
Subjt:  KKKIQKTKEIAVAIAKTSTFKS-NHRGTESVQHRKRGRPRKI-DEAQNEEKNEEL------SPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE

KAG7020516.1 hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0549.45Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFK-----SNHRGTESVQHRKRGRPRKIDEAQNEEKNEELSPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQ
        KKK QKTK+I+VAIA+TST K       H G +SVQ RKRGRPRK+ +   ++K     P++VA  P + K K+T DE  PP ++EG  KQ
Subjt:  KKKIQKTKEIAVAIAKTSTFK-----SNHRGTESVQHRKRGRPRKIDEAQNEEKNEELSPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQ

KGN62596.1 hypothetical protein Csa_022088 [Cucumis sativus]3.9e-0651.09Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFKSNHRGT--ESVQHRKRGRPRKI-DEAQNEEKNEELSPS--EVAKIPPENKVKTTEDEQPPPPTVEGGEKQE
        KKK QKTKEIAVAIA+TST K    G   + +Q RKRGRPRK+ +E QNE+++++  P   EVA+ PPE K+K T DE      +EG +++E
Subjt:  KKKIQKTKEIAVAIAKTSTFKSNHRGT--ESVQHRKRGRPRKI-DEAQNEEKNEELSPS--EVAKIPPENKVKTTEDEQPPPPTVEGGEKQE

XP_038884964.1 uncharacterized protein LOC120075548 [Benincasa hispida]1.3e-0960Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFKSNHRGT-ESVQHRKRGRPRKI-DEAQNEEKNEELSP--SEVAKIPPENKVKTTEDEQPPPPTVEGGEKQ
        KKK QKTKEIAVAIA+TS  K    G  +S+Q RKRGRPRK+ DE QN+++N++L P   EVA+ PPE K KTT D QPPP ++E G KQ
Subjt:  KKKIQKTKEIAVAIAKTSTFKSNHRGT-ESVQHRKRGRPRKI-DEAQNEEKNEELSP--SEVAKIPPENKVKTTEDEQPPPPTVEGGEKQ

TrEMBL top hitse value%identityAlignment
A0A0A0LRH2 Uncharacterized protein1.9e-0651.09Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFKSNHRGT--ESVQHRKRGRPRKI-DEAQNEEKNEELSPS--EVAKIPPENKVKTTEDEQPPPPTVEGGEKQE
        KKK QKTKEIAVAIA+TST K    G   + +Q RKRGRPRK+ +E QNE+++++  P   EVA+ PPE K+K T DE      +EG +++E
Subjt:  KKKIQKTKEIAVAIAKTSTFKSNHRGT--ESVQHRKRGRPRKI-DEAQNEEKNEELSPS--EVAKIPPENKVKTTEDEQPPPPTVEGGEKQE

A0A5A7VIE6 Zinc finger and BTB domain-containing protein 472.2e-1058.51Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFKSNHRGT-ESVQHRKRGRPRKI-DEAQNEEKNEELSP-----SEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE
        KKK QKTKEIAVAIA+TST K    G  +S+Q RKRGRPRK+ DE QNE++N++L P      EV + PPE K+K T DE PPP +V+ G KQE
Subjt:  KKKIQKTKEIAVAIAKTSTFKSNHRGT-ESVQHRKRGRPRKI-DEAQNEEKNEELSP-----SEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE

A0A6J1KLK8 uncharacterized protein LOC1114963536.1e-0549.46Show/hide
Query:  KKKIQKTKEIAVAIAKTSTFK-----SNHRGTESVQHRKRGRPRKI-DEAQNEEKNEELSPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE
        KKK QKTK+I+VAIA+TST K       H G +S Q RKRGRPRK+ DE  +++K      ++VA  P + K KTT DE  PP ++EG  KQ+
Subjt:  KKKIQKTKEIAVAIAKTSTFK-----SNHRGTESVQHRKRGRPRKI-DEAQNEEKNEELSPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTCGAAAGAAGAAGATCCAGAAGACGAAGGAGATTGCAGTGGCGATAGCGAAAACCTCCACTTTTAAATCCAATCATCGCGGCACCGAATCGGTACAGCACAGAAAGAG
GGGCAGACCTCGCAAGATTGATGAAGCACAAAACGAAGAGAAGAACGAGGAACTTTCGCCATCGGAAGTTGCAAAAATACCGCCGGAGAATAAAGTTAAAACCACCGAAG
ATGAGCAACCGCCGCCGCCCACTGTGGAAGGAGGTGAAAAACAAGAA
mRNA sequenceShow/hide mRNA sequence
TCTCGAAAGAAGAAGATCCAGAAGACGAAGGAGATTGCAGTGGCGATAGCGAAAACCTCCACTTTTAAATCCAATCATCGCGGCACCGAATCGGTACAGCACAGAAAGAG
GGGCAGACCTCGCAAGATTGATGAAGCACAAAACGAAGAGAAGAACGAGGAACTTTCGCCATCGGAAGTTGCAAAAATACCGCCGGAGAATAAAGTTAAAACCACCGAAG
ATGAGCAACCGCCGCCGCCCACTGTGGAAGGAGGTGAAAAACAAGAA
Protein sequenceShow/hide protein sequence
SRKKKIQKTKEIAVAIAKTSTFKSNHRGTESVQHRKRGRPRKIDEAQNEEKNEELSPSEVAKIPPENKVKTTEDEQPPPPTVEGGEKQE