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MS005160 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005160
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S Acidic ribosomal protein
Genome locationscaffold176:3117626..3118216
RNA-Seq ExpressionMS005160
SyntenyMS005160
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001859 - Trypanosoma cruzi ribosomal protein P2-like
IPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3992.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]1.9e-3992.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

XP_022152975.1 60S acidic ribosomal protein P2B-like [Momordica charantia]2.8e-43100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKEDSDD
Subjt:  EKEDSDD

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]5.5e-3991.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]5.5e-3991.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAA E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

TrEMBL top hitse value%identityAlignment
A0A5A7SR49 60S acidic ribosomal protein P2B-like5.6e-3786.92Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVGVE+DE+RI  LLS+VKGKD+TELIASGREKLASVPSGGGA+AV+A AGGAAGGGAAPA AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.4e-43100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKEDSDD
Subjt:  EKEDSDD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like2.7e-3991.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

A0A6J1GZW9 60S acidic ribosomal protein P2B-like6.6e-3892.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EVD DRI SLL+QVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA EKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like2.7e-3991.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAA E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B2.4e-2971.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKV+AAYLLAVLGGNTSP ADDVK+IL SVG E DE+++E LL+++K KDITE+IA+GRE+L+SVPSGGGA+ + APA   AGGGAAP A E KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SD+
Subjt:  EKEDSDD

P41099 60S acidic ribosomal protein P22.3e-2770.75Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKV+AA+LLA+LGGNTSP  +D+K+IL SVG + D+D+IE LLSQVKGKDITELIASGRE+LASVPSGGG VAVAA AGG  G   A AA E KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSD
        E+ D +
Subjt:  EKEDSD

P46252 60S acidic ribosomal protein P2A1.7e-2773.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MK VAAYLLAVL GN SP ADD+  IL SVG EVD +++E LLSQ+ GKDITELIA+GREK ASVP GGG VAVAA A   A GGAAP AAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD

P51407 60S acidic ribosomal protein P2-12.1e-2567.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV
        MKVVAA+LLAVL G  SP   D+K+IL SVG E ++ +IE LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV

Query:  EEKEDSDD
        EEKE+SDD
Subjt:  EEKEDSDD

Q9SLF7 60S acidic ribosomal protein P2-24.7e-2567.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV
        MKVVAAYLLAVL G  SP + D+K IL SVG E ++ +IE LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV

Query:  EEKEDSDD
        EEKE+SDD
Subjt:  EEKEDSDD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family3.3e-2667.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV
        MKVVAAYLLAVL G  SP + D+K IL SVG E ++ +IE LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV

Query:  EEKEDSDD
        EEKE+SDD
Subjt:  EEKEDSDD

AT2G27710.2 60S acidic ribosomal protein family3.3e-2667.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV
        MKVVAAYLLAVL G  SP + D+K IL SVG E ++ +IE LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV

Query:  EEKEDSDD
        EEKE+SDD
Subjt:  EEKEDSDD

AT2G27710.3 60S acidic ribosomal protein family3.3e-2667.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV
        MKVVAAYLLAVL G  SP + D+K IL SVG E ++ +IE LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV

Query:  EEKEDSDD
        EEKE+SDD
Subjt:  EEKEDSDD

AT2G27720.1 60S acidic ribosomal protein family1.5e-2667.59Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV
        MKVVAA+LLAVL G  SP   D+K+IL SVG E ++ +IE LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKV

Query:  EEKEDSDD
        EEKE+SDD
Subjt:  EEKEDSDD

AT3G44590.2 60S acidic ribosomal protein family3.3e-2666.36Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE
        MKV AA+LLAVLGGN +P AD++K+I+ +VG +VD + IE LL +V GKDI ELIASGREKLASVPSGGG    AAP+ G  GG AAPA   EKKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVE

Query:  EKEDSDD
        EKE+SDD
Subjt:  EKEDSDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTGTCGCTGCGTATTTGTTGGCCGTACTGGGTGGCAACACCAGCCCCGGAGCTGATGATGTGAAGAACATTCTTAATTCAGTTGGGGTTGAGGTCGATGAGGA
CAGGATTGAGTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGAGCTGATAGCTTCGGGACGGGAGAAGTTGGCATCAGTGCCATCTGGCGGCGGTGCAGTTGCCG
TCGCTGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCCGCCGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGAT
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTTGTCGCTGCGTATTTGTTGGCCGTACTGGGTGGCAACACCAGCCCCGGAGCTGATGATGTGAAGAACATTCTTAATTCAGTTGGGGTTGAGGTCGATGAGGA
CAGGATTGAGTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGAGCTGATAGCTTCGGGACGGGAGAAGTTGGCATCAGTGCCATCTGGCGGCGGTGCAGTTGCCG
TCGCTGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCCGCCGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGAT
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDD