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MS005178 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005178
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA polymerase epsilon subunit 3
Genome locationscaffold176:3291858..3292372
RNA-Seq ExpressionMS005178
SyntenyMS005178
Gene Ontology termsGO:0006272 - leading strand elongation (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0031507 - heterochromatin assembly (biological process)
GO:0042766 - nucleosome mobilization (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0008623 - CHRAC (cellular component)
GO:0031490 - chromatin DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061718.1 DNA polymerase epsilon subunit D isoform X1 [Cucumis melo var. makuwa]1.1e-4193.07Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT LSR+NDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

KAG6605978.1 DNA polymerase epsilon subunit 3, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4094.06Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT    SNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

KAG7035929.1 DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-4094.06Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT    SNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

XP_022152961.1 DNA polymerase epsilon subunit 3 [Momordica charantia]1.5e-4196.04Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT    SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

XP_023533668.1 DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo]1.2e-4094.06Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT    SNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

TrEMBL top hitse value%identityAlignment
A0A1S3BNA4 DNA polymerase epsilon subunit D4.3e-3990.1Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT    +NDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

A0A5A7V2B9 DNA polymerase epsilon subunit D isoform X15.4e-4293.07Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT LSR+NDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

A0A6J1DJA4 DNA polymerase epsilon subunit 37.1e-4296.04Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT    SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

A0A6J1H495 DNA polymerase epsilon subunit 36.0e-4194.06Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT    SNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

A0A6J1K184 DNA polymerase epsilon subunit 37.8e-4193.07Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESAR+FIHYLSAT    SNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

SwissProt top hitse value%identityAlignment
Q3SZN5 DNA polymerase epsilon subunit 35.4e-0733.71Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q5R4W3 DNA polymerase epsilon subunit 35.4e-0733.71Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q642A5 DNA polymerase epsilon subunit 35.4e-0733.71Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q9JKP7 DNA polymerase epsilon subunit 37.1e-0732.58Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + KR+T+ A DVL A+E+MEF   + PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q9NRF9 DNA polymerase epsilon subunit 35.4e-0733.71Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Arabidopsis top hitse value%identityAlignment
AT2G27470.1 nuclear factor Y, subunit B112.8e-2764.13Show/hide
Query:  IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        ++ELP  IVRRVVK+KLS+CS + D+S++K++LLAF ESARIFIHYLSAT    +ND CK+++RQT+KADDV KALE+M+F E + PLK+SL
Subjt:  IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

AT5G08190.1 nuclear factor Y, subunit B125.8e-0431.52Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S    S SN++C +  ++TI  + VLKAL+ + F E V  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS

AT5G23090.1 nuclear factor Y, subunit B133.4e-0431.52Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S    S SND+C +  ++TI  + VLKAL+ + F E +  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS

AT5G23090.2 nuclear factor Y, subunit B133.4e-0431.52Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S    S SND+C +  ++TI  + VLKAL+ + F E +  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS

AT5G23090.4 nuclear factor Y, subunit B133.4e-0431.52Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S    S SND+C +  ++TI  + VLKAL+ + F E +  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAA
CAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACATCTCTAAGCAGGTCGAATGATATATGCAAGGAATCGAAGAGGCAGA
CGATAAAGGCGGATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAA
CAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACATCTCTAAGCAGGTCGAATGATATATGCAAGGAATCGAAGAGGCAGA
CGATAAAGGCGGATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT
Protein sequenceShow/hide protein sequence
MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN