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MS005185 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005185
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationscaffold176:3350799..3350930
RNA-Seq ExpressionMS005185
SyntenyMS005185
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR012340 - Nucleic acid-binding, OB-fold
IPR022666 - Ribosomal Proteins L2, RNA binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QKZ95118.1 ribosomal protein L2 [Parthenium hysterophorus]7.1e-0978.05Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
QKZ95141.1 ribosomal protein L2 [Parthenium hysterophorus]7.1e-0978.05Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
YP_009309817.1 ribosomal protein L2 [Orobanche pancicii]7.1e-0978.05Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
YP_009493746.1 ribosomal protein L2 [Weigela florida]2.1e-0875.61Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
YP_009674176.1 ribosomal protein L2 [Diphelypaea coccinea]9.3e-0975.61Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG I+ IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
TrEMBL top hitse value%identityAlignment
A0A1C8E275 50S ribosomal protein L2, chloroplastic3.4e-0978.05Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
A0A2U8XH78 50S ribosomal protein L2, chloroplastic1.0e-0875.61Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
A0A514TND5 50S ribosomal protein L2, chloroplastic4.5e-0975.61Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG I+ IEYDPNRNAYICLI+YRDGEKR+IL  R TII
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
A0A7D5HHA6 50S ribosomal protein L2, chloroplastic3.4e-0978.05Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
A0A7D5HSX0 50S ribosomal protein L2, chloroplastic3.4e-0978.05Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLIYYRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
SwissProt top hitse value%identityAlignment
A6MM78 50S ribosomal protein L2, chloroplastic1.8e-1073.17Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
P06509 50S ribosomal protein L2, chloroplastic1.8e-1073.17Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
Q1KXP4 50S ribosomal protein L2, chloroplastic3.5e-1175.61Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
Q332R5 50S ribosomal protein L2, chloroplastic3.5e-1175.61Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+YRDGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
Q9B1H9 50S ribosomal protein L2, chloroplastic1.3e-1073.17Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
Arabidopsis top hitse value%identityAlignment
ATCG00830.1 ribosomal protein L21.6e-1173.17Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
ATCG01310.1 ribosomal protein L21.6e-1173.17Show/hide
Query:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII
        K  YG IV IEYDPNRNAYICLI+Y DGEKR+IL  R  II
Subjt:  KKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCAGAATAAAAAAGACATATGGTAGCATCGTAATCATAGAATATGACCCTAATCGAAATGCATACATTTGTCTCATATACTATAGGGATGGTGAGAAAAGACATATTTT
ACGTTCTAGAGAGACTATAATT
mRNA sequenceShow/hide mRNA sequence
TTCAGAATAAAAAAGACATATGGTAGCATCGTAATCATAGAATATGACCCTAATCGAAATGCATACATTTGTCTCATATACTATAGGGATGGTGAGAAAAGACATATTTT
ACGTTCTAGAGAGACTATAATT
Protein sequenceShow/hide protein sequence
FRIKKTYGSIVIIEYDPNRNAYICLIYYRDGEKRHILRSRETII