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MS005230 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005230
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase EL5
Genome locationscaffold83:161478..162964
RNA-Seq ExpressionMS005230
SyntenyMS005230
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030344.1 putative E3 ubiquitin-protein ligase RHY1A, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-6774.07Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSS--TQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVS
        MAGMLPGVECARRRRFHQSIT SD+PSTAAKLGSTRRPSFCLYTSNRDFH+TSSS  +QQRS S+QA+QN+KLGEIAREAKERLDERL+T RKPE     
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSS--TQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVS

Query:  KREEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFP
        +++     K S ++ E  KGKE+   KK  +WG   KWKA EQ+ECAVCLEGFR GEP+VHLPCAHKFHS+CLVPWLQTN+HCP CRFP
Subjt:  KREEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFP

XP_004139268.1 probable E3 ubiquitin-protein ligase RHY1A [Cucumis sativus]1.7e-6771.5Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSK
        MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFHL +SSS+QQRS +NQA+QNDKLGEIAREAKERLDERL+T RKPE      
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSK

Query:  REEEVRSK-------GSEKEGEMTKGKEDERKKKLMSWG----KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
          EEV+ K       G +KE + TKGKE+E KK+  SWG    KWKA EQ+EC+VCLE FR  EP++HLPCAHKFHS+CLVPWLQ N+HCP CRFPI+ P
Subjt:  REEEVRSK-------GSEKEGEMTKGKEDERKKKLMSWG----KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP

XP_022143236.1 E3 ubiquitin-protein ligase EL5 [Momordica charantia]4.1e-9896.88Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETV---
        MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRR+PETETV   
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETV---

Query:  -SKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
         SKREEEVRSKGSEKEGEMTKGKE+ERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
Subjt:  -SKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP

XP_022965966.1 probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima]5.4e-6672.63Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSKR
        MAGMLPGVECARRRRFHQSITSS+S STAAKLGSTRR SFCLYTSNRDFHLTSSS+QQR  SN A+QN+KLG+ AREAKERLDERL+T RKPE       
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSKR

Query:  EEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISA
         EEVR K      E  KGKE+   KK  SWG   KWKA EQ+EC VCLE FR  EP+VHLPCAHKFHS CLVPWLQ N+HCP CR+PI A
Subjt:  EEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISA

XP_038891102.1 probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida]9.3e-6674.36Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLT-SSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSK
        MAGMLPGVECARRRRFHQSI SSDSPSTAAK GSTRRPSFCLYTSNRDFH T SSS+Q RS SNQA+QN+KLGEIAREAKERLDERL+T RKPE      
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLT-SSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSK

Query:  REEEVRSKG-SEKEG---EMTKGKEDE--RKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI
          E+V  KG SEK G   E TKGKE+     KK  +WG   KW+A EQ+EC VCLE FR GEP+VHLPCAHKFHS+CLVPWLQ NSHCP CRFPI
Subjt:  REEEVRSKG-SEKEG---EMTKGKEDE--RKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI

TrEMBL top hitse value%identityAlignment
A0A0A0LG47 RING-type domain-containing protein8.2e-6871.5Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSK
        MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFHL +SSS+QQRS +NQA+QNDKLGEIAREAKERLDERL+T RKPE      
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSK

Query:  REEEVRSK-------GSEKEGEMTKGKEDERKKKLMSWG----KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
          EEV+ K       G +KE + TKGKE+E KK+  SWG    KWKA EQ+EC+VCLE FR  EP++HLPCAHKFHS+CLVPWLQ N+HCP CRFPI+ P
Subjt:  REEEVRSK-------GSEKEGEMTKGKEDERKKKLMSWG----KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP

A0A1S3C563 RING-H2 finger protein ATL165.5e-6470.26Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPE------
        MAGMLPGVECARRRRFH SI SSDSPSTAAK GSTRRPSFCLYTSNRDFHL +SSS+QQRS +N+A QN+KLGEIAREAKERLDERL+T RKPE      
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHL-TSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPE------

Query:  --TETVSKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWG----KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCR
           E V  +E   ++ G  KE   TKGKE+E +K+  SWG    KWKA EQ EC+VCLE FR GEP++HLPCAHKFHS+CLVPWLQ N+HCP CR
Subjt:  --TETVSKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWG----KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCR

A0A6J1CPN1 E3 ubiquitin-protein ligase EL52.0e-9896.88Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETV---
        MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRR+PETETV   
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETV---

Query:  -SKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
         SKREEEVRSKGSEKEGEMTKGKE+ERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
Subjt:  -SKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP

A0A6J1G4D6 probable E3 ubiquitin-protein ligase RHY1A1.0e-6573.54Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSS--TQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVS
        MAGMLPGVECARRRRFHQSITSSD+PSTAAKLGSTRRPSFCLYTSNRDFH+TSSS  +QQRS S+QA+QN+KLGEIAREAKERLDERL+T RKPE     
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSS--TQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVS

Query:  KREEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFP
                   +K GE    KE+   KK  +WG   KWKA EQ+ECAVCLEGFR GEP+VHLPCAHKFHS+CLVPWLQTN+HCP CRFP
Subjt:  KREEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFP

A0A6J1HQI5 probable E3 ubiquitin-protein ligase RHY1A isoform X12.6e-6672.63Show/hide
Query:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSKR
        MAGMLPGVECARRRRFHQSITSS+S STAAKLGSTRR SFCLYTSNRDFHLTSSS+QQR  SN A+QN+KLG+ AREAKERLDERL+T RKPE       
Subjt:  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSKR

Query:  EEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISA
         EEVR K      E  KGKE+   KK  SWG   KWKA EQ+EC VCLE FR  EP+VHLPCAHKFHS CLVPWLQ N+HCP CR+PI A
Subjt:  EEEVRSKGSEKEGEMTKGKEDERKKKLMSWG---KWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISA

SwissProt top hitse value%identityAlignment
Q6AVN2 E3 ubiquitin-protein ligase SIRP16.3e-0939.71Show/hide
Query:  GKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI
        G    +K+ + +    K  E   C+VCL+    G     +PC HKFHSSC++PWL+ +S CP CRF +
Subjt:  GKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI

Q852U6 Probable E3 ubiquitin-protein ligase RHY1A1.5e-1050Show/hide
Query:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPIS
        E ++C++CLE F  G+ ++ LPC H FHSSCL PWL+    CP CR  I+
Subjt:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPIS

Q8LPN7 E3 ubiquitin-protein ligase RING1-like4.4e-1046.94Show/hide
Query:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI
        E  +CAVC++ F  G  V  +PC H FH  CL+PWL+ ++ CP CRF +
Subjt:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI

Q91YL2 E3 ubiquitin-protein ligase RNF1261.1e-0855.81Show/hide
Query:  ECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCR
        EC VC E +  GE V  LPC H FH SC+VPWL+ +  CP CR
Subjt:  ECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCR

Q9C1X4 Uncharacterized RING finger protein P32A8.03c2.2e-0944.9Show/hide
Query:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI
        E+ EC +C+E F+  + V+ LPC H FH +C+ PWL+ N  C  CR P+
Subjt:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI

Arabidopsis top hitse value%identityAlignment
AT1G49850.1 RING/U-box superfamily protein1.1e-1150Show/hide
Query:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPIS
        E ++C++CLE F  G+ ++ LPC H FHSSCL PWL+    CP CR  I+
Subjt:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPIS

AT2G15580.1 RING/U-box superfamily protein1.2e-3447.96Show/hide
Query:  MAGMLPGVECARRRRFH---QSITSSDSPSTAAKLGS--TRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQND---KLGEIAREAKERLDERLKTRRKP
        MAGMLPGVECARRRRFH     I SS++ S AA  G   TRRPSF LYT+N + H    S  +RS  N+++  D   KL   A+EAK+RL++RL  R  P
Subjt:  MAGMLPGVECARRRRFH---QSITSSDSPSTAAKLGS--TRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQND---KLGEIAREAKERLDERLKTRRKP

Query:  ETETVSKREEEVRSKGSEKE-GEMTKGKEDERKK--KLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI
         T    K +     +G  K  G++       +K   +LM W K +  EQ++CA+CL+ F+ GE +VHLPCAHKFHS CL+PWL TN +CP CR  I
Subjt:  ETETVSKREEEVRSKGSEKE-GEMTKGKEDERKK--KLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI

AT2G15580.2 RING/U-box superfamily protein5.7e-1343.9Show/hide
Query:  MAGMLPGVECARRRRFH---QSITSSDSPSTAAKLGS--TRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQND---KLGEIAREAKERLDERLK-----
        MAGMLPGVECARRRRFH     I SS++ S AA  G   TRRPSF LYT+N + H    S  +RS  N+++  D   KL   A+EAK+RL++RL+     
Subjt:  MAGMLPGVECARRRRFH---QSITSSDSPSTAAKLGS--TRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQND---KLGEIAREAKERLDERLK-----

Query:  -TRRKPETETVSKREEEVRSKGS
         + +  +T+ ++  +E V   G+
Subjt:  -TRRKPETETVSKREEEVRSKGS

AT3G19950.1 RING/U-box superfamily protein3.1e-1146.94Show/hide
Query:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI
        E  +CAVC++ F  G  V  +PC H FH  CL+PWL+ ++ CP CRF +
Subjt:  EQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPI

AT3G58720.1 RING/U-box superfamily protein4.1e-1143.66Show/hide
Query:  GKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP
        G E  R  + +S  +    + K C+VCLE F   E V+  PC H FH  C+VPWL+T   CP CRF I  P
Subjt:  GKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAATGTTGCCGGGAGTCGAATGCGCGAGAAGGCGGCGGTTCCACCAGAGCATAACCTCGTCGGACTCGCCGTCCACGGCGGCGAAACTGGGATCCACCAGAAG
GCCCTCCTTCTGTTTGTACACCAGCAACCGCGATTTCCACCTCACTTCATCTTCTACACAGCAACGTAGCTGGTCGAATCAAGCTTTCCAGAACGATAAACTGGGTGAAA
TTGCGAGAGAAGCCAAAGAGAGGTTGGATGAGAGGTTGAAGACACGCAGAAAACCAGAGACTGAAACTGTAAGTAAGAGGGAAGAAGAAGTAAGGTCAAAAGGGTCAGAA
AAGGAAGGGGAAATGACAAAAGGCAAAGAAGACGAGAGAAAGAAGAAGTTGATGAGTTGGGGAAAGTGGAAGGCGTGGGAGCAAAAGGAGTGCGCCGTTTGCCTAGAAGG
GTTCAGGGGTGGCGAGCCGGTGGTCCATCTGCCATGCGCCCACAAGTTCCATTCCTCCTGCCTCGTCCCTTGGCTCCAAACCAACTCCCATTGCCCTTCTTGCAGATTCC
CCATTTCCGCTCCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGAATGTTGCCGGGAGTCGAATGCGCGAGAAGGCGGCGGTTCCACCAGAGCATAACCTCGTCGGACTCGCCGTCCACGGCGGCGAAACTGGGATCCACCAGAAG
GCCCTCCTTCTGTTTGTACACCAGCAACCGCGATTTCCACCTCACTTCATCTTCTACACAGCAACGTAGCTGGTCGAATCAAGCTTTCCAGAACGATAAACTGGGTGAAA
TTGCGAGAGAAGCCAAAGAGAGGTTGGATGAGAGGTTGAAGACACGCAGAAAACCAGAGACTGAAACTGTAAGTAAGAGGGAAGAAGAAGTAAGGTCAAAAGGGTCAGAA
AAGGAAGGGGAAATGACAAAAGGCAAAGAAGACGAGAGAAAGAAGAAGTTGATGAGTTGGGGAAAGTGGAAGGCGTGGGAGCAAAAGGAGTGCGCCGTTTGCCTAGAAGG
GTTCAGGGGTGGCGAGCCGGTGGTCCATCTGCCATGCGCCCACAAGTTCCATTCCTCCTGCCTCGTCCCTTGGCTCCAAACCAACTCCCATTGCCCTTCTTGCAGATTCC
CCATTTCCGCTCCT
Protein sequenceShow/hide protein sequence
MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSKREEEVRSKGSE
KEGEMTKGKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP