CuGenDBv2

Gene ID	MS005233
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S11-like
Genome location	scaffold83:184165..184696
RNA-Seq Expression	MS005233
Synteny	MS005233
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000266 - Ribosomal protein S17/S11 IPR012340 - Nucleic acid-binding, OB-fold IPR019979 - Ribosomal protein S17, conserved site IPR028333 - Ribosomal protein S17, archaeal/eukaryotic IPR032440 - 40S ribosomal protein S11, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004153463.1 40S ribosomal protein S11 [Cucumis sativus]

1.6e-54

99.07

Show/hide

Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

XP_008447825.1 PREDICTED: 40S ribosomal protein S11-like [Cucumis melo]

1.6e-54

99.07

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

XP_022143218.1 40S ribosomal protein S11-like [Momordica charantia]

4.2e-55

100

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

XP_022952178.1 40S ribosomal protein S11-like [Cucurbita moschata]

2.1e-54

99.07

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSS 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

XP_038887258.1 40S ribosomal protein S11-like [Benincasa hispida]

4.2e-55

100

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K691 Ribosomal_S17_N domain-containing protein

7.8e-55

99.07

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

A0A1S3BHR3 40S ribosomal protein S11-like

7.8e-55

99.07

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

A0A5D3DI18 40S ribosomal protein S11-like

7.8e-55

99.07

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

A0A6J1CQ61 40S ribosomal protein S11-like

2.0e-55

100

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

A0A6J1HZI1 40S ribosomal protein S11-like

1.0e-54

99.07

Show/hide

Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSS 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAFAGI
Subjt:  GKKAFAGI

SwissProt top hits

e value

%identity

Alignment

P16181 40S ribosomal protein S11-1

2.0e-52

89.91

Show/hide

Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSSS 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  -GKKAFAGI
         GKKAF G+
Subjt:  -GKKAFAGI

P17093 40S ribosomal protein S11

1.2e-52

91.67

Show/hide

Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSS 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
         KKAF G+
Subjt:  GKKAFAGI

P25460 40S ribosomal protein S11

4.1e-53

93.33

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS++ 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAF
        GKKAF
Subjt:  GKKAF

P42733 40S ribosomal protein S11-3

2.4e-53

90.74

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAF G+
Subjt:  GKKAFAGI

Q9M5M1 40S ribosomal protein S11

5.4e-53

91.67

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS  
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
         KKAF  I
Subjt:  GKKAFAGI

Arabidopsis top hits

e value

%identity

Alignment

AT3G48930.1 Nucleic acid-binding, OB-fold-like protein

1.5e-53

89.91

Show/hide

Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSSS 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  -GKKAFAGI
         GKKAF G+
Subjt:  -GKKAFAGI

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein

9.4e-53

88.89

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        GTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSSS 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAF G+
Subjt:  GKKAFAGI

AT5G23740.1 ribosomal protein S11-beta

1.7e-54

90.74

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Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR
        G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ 
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR

Query:  GKKAFAGI
        GKKAF G+
Subjt:  GKKAFAGI

Sequences

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CDS sequence

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GGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAG
GAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTA
TTATTGGCCAATGCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATT

mRNA sequence

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Protein sequence

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GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI

MS005233 (gene) of Bitter gourd (TR) v1 genome