CuGenDBv2

Gene ID	MS005243
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein
Genome location	scaffold83:253559..256645
RNA-Seq Expression	MS005243
Synteny	MS005243
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-67

89.54

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDD--DDEEYDVEQEESKGE
        YGLEFLSEDDGK EL+KFPR  ++GDDD DEEDDDD  DDEEYDVEQEE   E
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDD--DDEEYDVEQEESKGE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

1.3e-73

98.03

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDD-DEEYDVEQEESKGE
        YGLEFLSEDD KGELSKFPRIGIMGDDDTDEEDDDDD DEEYDVEQEESKGE
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDD-DEEYDVEQEESKGE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

1.4e-67

90.2

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE
        YGLEFLSEDDGK EL+KFPR  ++GDDD DEE  DDDDDDEEYDVEQEE   E
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

9.7e-66

88.08

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESKGE
        YGLEFLSEDDGK EL+KFPR  ++GDDD DEEDDDDDD+  DVEQE  + E
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESKGE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

3.0e-67

89.54

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE
        YGLEFLSEDDGK EL+KFPR  ++GDDD DEE  DDDDDDEEYDVEQEE   E
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FW87 Uncharacterized protein

5.8e-64

84.56

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGR+YQGQLMQMTMMATPN+N+ELHYLN EDRLLRWLLVKHR+TK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESK
        YGLEFL+EDDGKGELSKF R  I  D+D DE+DDDDDDEEYDV+QEE K
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESK

A0A6J1CN79 uncharacterized protein LOC111013137

6.1e-74

98.03

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDD-DEEYDVEQEESKGE
        YGLEFLSEDD KGELSKFPRIGIMGDDDTDEEDDDDD DEEYDVEQEESKGE
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDD-DEEYDVEQEESKGE

A0A6J1FEF6 uncharacterized protein LOC111443208

6.6e-68

90.2

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE
        YGLEFLSEDDGK EL+KFPR  ++GDDD DEE  DDDDDDEEYDVEQEE   E
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEE--DDDDDDEEYDVEQEESKGE

A0A6J1KXT7 uncharacterized protein LOC111498530

4.7e-66

88.08

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESKGE
        YGLEFLSEDDGK EL+KFPR  ++GDDD DEEDDDDDD+  DVEQE  + E
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESKGE

A0A7N2L1D1 Uncharacterized protein

1.4e-65

85.91

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGR+YQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESK
        YGLEFLSEDDGKGELSKF R  I  DDD DE+DDDDDD+EYDV+QEE K
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.1e-43

65.44

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR YQGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDD
         G    SE +    +      G + D  + +EDD++
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

4.9e-39

61.76

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR Y     Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDD
         G    SE +    +      G + D  + +EDD++
Subjt:  YGLEFLSEDDGKGELSKFPRIGIMGDDDTDEEDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGT
CACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGAATTAAGAAACTTGATGGAAGATTTTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCA
ACATGAACAAGGAGTTACATTACTTGAACAAGGAAGATCGTTTGTTGCGATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGTGAAGACGAT
GGGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGTATAATGGGTGATGATGACACTGATGAAGAAGACGATGATGATGATGATGAAGAATACGATGTGGAACAAGAAGA
GAGCAAAGGAGAG

mRNA sequence

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Protein sequence

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MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDD
GKGELSKFPRIGIMGDDDTDEEDDDDDDEEYDVEQEESKGE

MS005243 (gene) of Bitter gourd (TR) v1 genome