; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005256 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005256
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein At2g31720-like
Genome locationscaffold83:350638..351264
RNA-Seq ExpressionMS005256
SyntenyMS005256
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599340.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]4.7e-3452.87Show/hide
Query:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR
        N DDP A     +VN   P AEI    +P    +N  DP  E+        + E+PA MREHI   MGGY +Q+IIEK LTATD+RT+QGRLSLP K +R
Subjt:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR

Query:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV
         EF+TA EE+ L  R  +G+  LNYIDT I+G DL+ + IRFKKW +G  Y NCL+NKWNSFARA+ LK G  V
Subjt:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV

XP_022146365.1 putative B3 domain-containing protein At2g27410 [Momordica charantia]3.8e-2045.45Show/hide
Query:  PEIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN
        PE+PAAMR+ I+ +GGYGIQL+I+K L  TD+  + GRLSLP KKLR       EER L+ +          +D  I+ PDL+E  I  KKW+IG+    
Subjt:  PEIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN

Query:  CLMNKWNSFARAHHLKAGNTV
        CLM +WNSF     L++G+ +
Subjt:  CLMNKWNSFARAHHLKAGNTV

XP_022946870.1 B3 domain-containing protein At2g31720-like [Cucurbita moschata]4.2e-3553.45Show/hide
Query:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR
        N DDP A     +VNG  P AEI    +P    +N  DP  E+        + E+PA MREHI   MGGY +Q+IIEK LTATD+RT+QGRLSLP K +R
Subjt:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR

Query:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV
         EF+TA EE+ L  R  +G+  LNYIDT I+G DL+ + IRFKKW +G  Y NCL+NKWNSFARA+ LK G  V
Subjt:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV

XP_022998957.1 B3 domain-containing protein At2g31720-like [Cucurbita maxima]9.4e-3555.49Show/hide
Query:  NADDPGA----AMVNGGDPGAELPAAGGNGGDP----------EIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEER
        N  DP A     +VNG  P AE+P    N  DP          E+PA MREHI   MGGY +Q+IIEK LTATD+RT+QGRLSLP K +R EF+TA EE+
Subjt:  NADDPGA----AMVNGGDPGAELPAAGGNGGDP----------EIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEER

Query:  FLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV
         L  R  +G+  LNYIDT I+G DLR + IRFKKW +G  Y NCL+NKWNSFARA+ LK G  V
Subjt:  FLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV

XP_023545398.1 B3 domain-containing protein At2g31720-like [Cucurbita pepo subsp. pepo]2.7e-3452.87Show/hide
Query:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR
        N  DP A     +VNG  P AE  N  +P    +N  DP  E+        + E+PA MR+HI   MGGY +Q+IIEK LTATD+RT+QGRLSLP K +R
Subjt:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR

Query:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV
         EF+TA EE+ L  R  +GE  LNYIDT I+G DL+ + IRFKKW +G  Y NCL+NKWNSFARA+ LK G  V
Subjt:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV

TrEMBL top hitse value%identityAlignment
A0A5A7VFT2 B3 domain-containing protein3.5e-1944Show/hide
Query:  EIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETAL-----NYIDTIILGPDLRESAIRFKKWRIGA
        E+PAAMRE I+  GGY IQL+IEK L  +D+  + GRL LP  KL+GEF    E R L    G  +  +     N ++  I+  DLRES++  KKW+IG+
Subjt:  EIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETAL-----NYIDTIILGPDLRESAIRFKKWRIGA

Query:  KYANCLMNKWNSFARAHHLKAGNTV
            CL+  WNSF   + LK+G+ V
Subjt:  KYANCLMNKWNSFARAHHLKAGNTV

A0A6J1CSV9 B3 domain-containing protein At2g31420-like1.2e-1943.33Show/hide
Query:  EIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANC
        E+PA +R+ I  +GGY IQ++I+K L  TDL  + GRLS+P KKL  +F T  EE+ L+ +  E +   N +  +IL P LRES I  KKW+IG++   C
Subjt:  EIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANC

Query:  LMNKWNSFARAHHLKAGNTV
        L+++WNS A+ + L++G+ +
Subjt:  LMNKWNSFARAHHLKAGNTV

A0A6J1CX35 putative B3 domain-containing protein At2g274101.9e-2045.45Show/hide
Query:  PEIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN
        PE+PAAMR+ I+ +GGYGIQL+I+K L  TD+  + GRLSLP KKLR       EER L+ +          +D  I+ PDL+E  I  KKW+IG+    
Subjt:  PEIPAAMREHIIGMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN

Query:  CLMNKWNSFARAHHLKAGNTV
        CLM +WNSF     L++G+ +
Subjt:  CLMNKWNSFARAHHLKAGNTV

A0A6J1G587 B3 domain-containing protein At2g31720-like2.0e-3553.45Show/hide
Query:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR
        N DDP A     +VNG  P AEI    +P    +N  DP  E+        + E+PA MREHI   MGGY +Q+IIEK LTATD+RT+QGRLSLP K +R
Subjt:  NGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR

Query:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV
         EF+TA EE+ L  R  +G+  LNYIDT I+G DL+ + IRFKKW +G  Y NCL+NKWNSFARA+ LK G  V
Subjt:  GEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV

A0A6J1K9G9 B3 domain-containing protein At2g31720-like4.6e-3555.49Show/hide
Query:  NADDPGA----AMVNGGDPGAELPAAGGNGGDP----------EIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEER
        N  DP A     +VNG  P AE+P    N  DP          E+PA MREHI   MGGY +Q+IIEK LTATD+RT+QGRLSLP K +R EF+TA EE+
Subjt:  NADDPGA----AMVNGGDPGAELPAAGGNGGDP----------EIPAAMREHII-GMGGYGIQLIIEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEER

Query:  FLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV
         L  R  +G+  LNYIDT I+G DLR + IRFKKW +G  Y NCL+NKWNSFARA+ LK G  V
Subjt:  FLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV

SwissProt top hitse value%identityAlignment
Q9SCJ8 Putative B3 domain-containing protein At3g496102.5e-0633.04Show/hide
Query:  IQLIIEKVLTATDLRTDQGRLSLP-PKKLRGEFLTAAEERFLV--RRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN------CLMNKWNSF
        I+LI EK LTATD++  + RL +P  K LR +FLT  E R +   +   E +T    + TII+    +E ++RF  W +  K +        L   WN  
Subjt:  IQLIIEKVLTATDLRTDQGRLSLP-PKKLRGEFLTAAEERFLV--RRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN------CLMNKWNSF

Query:  ARAHHLKAGNTV
           + LKA + +
Subjt:  ARAHHLKAGNTV

Arabidopsis top hitse value%identityAlignment
AT2G27410.1 Domain of unknown function (DUF313)1.8e-0425.77Show/hide
Query:  GYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR-GEFLTAAEERFL---VRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNS
        GY  +LI  + L  TDL+  + RLS+P K+++  +FLT  E R +     +  +    +N++D     P+L +  +  +KW++   +    +  W +
Subjt:  GYGIQLIIEKVLTATDLRTDQGRLSLPPKKLR-GEFLTAAEERFL---VRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNS

AT2G31420.1 Domain of unknown function (DUF313)2.4e-0428.87Show/hide
Query:  DDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHIIGMGGYGIQLIIE-KVLTATDLRTDQGRLSLPPKKL-RGEFLTAAEERFL------VRRGGEG
        D P  +  N  D  +  PA      +  IP  + + +    GY  +LII+ +VL  TDLR +QG LS+   KL + +FLT  E RFL       +R G  
Subjt:  DDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHIIGMGGYGIQLIIE-KVLTATDLRTDQGRLSLPPKKL-RGEFLTAAEERFL------VRRGGEG

Query:  ETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNS
              +   ++ P+  +  +  KKW     +   L + WN+
Subjt:  ETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNS

AT3G49610.1 Domain of unknown function (DUF313)1.8e-0733.04Show/hide
Query:  IQLIIEKVLTATDLRTDQGRLSLP-PKKLRGEFLTAAEERFLV--RRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN------CLMNKWNSF
        I+LI EK LTATD++  + RL +P  K LR +FLT  E R +   +   E +T    + TII+    +E ++RF  W +  K +        L   WN  
Subjt:  IQLIIEKVLTATDLRTDQGRLSLP-PKKLRGEFLTAAEERFLV--RRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYAN------CLMNKWNSF

Query:  ARAHHLKAGNTV
           + LKA + +
Subjt:  ARAHHLKAGNTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAATTGCGGCGACCCAGGCGCTGAAATTACAAACGGCGATGTCCCGGGTGCGGCGGAGACGGCGACGATTGTAAACGGCGGCGACCCAGGCGCTGAAATTGCAAA
CGGCGATGACCCAGGTGCGGCGGAGGCGGTGGCGATGGTGAACGGCGGCGACCCAGGCGCTGAAATTGCAAACGCCGATGACCCAGGTGCGGCGATGGTGAATGGCGGCG
ACCCAGGTGCGGAATTGCCGGCGGCGGGGGGGAATGGCGGTGACCCAGAAATACCGGCGGCGATGAGAGAGCATATAATAGGGATGGGGGGGTACGGAATACAACTGATA
ATCGAGAAGGTGTTGACGGCGACGGACTTGAGGACGGATCAGGGGCGGCTGTCGCTGCCGCCGAAGAAGCTGCGGGGGGAGTTTCTGACGGCGGCGGAGGAGAGGTTTCT
GGTGCGGCGCGGCGGCGAGGGGGAGACGGCGCTGAACTACATAGACACCATAATTTTGGGGCCGGATCTAAGAGAGAGCGCAATCCGGTTCAAGAAGTGGCGAATTGGGG
CAAAATACGCCAATTGTTTGATGAATAAATGGAACTCATTTGCCAGAGCTCACCACCTGAAGGCCGGAAACACTGTG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAATTGCGGCGACCCAGGCGCTGAAATTACAAACGGCGATGTCCCGGGTGCGGCGGAGACGGCGACGATTGTAAACGGCGGCGACCCAGGCGCTGAAATTGCAAA
CGGCGATGACCCAGGTGCGGCGGAGGCGGTGGCGATGGTGAACGGCGGCGACCCAGGCGCTGAAATTGCAAACGCCGATGACCCAGGTGCGGCGATGGTGAATGGCGGCG
ACCCAGGTGCGGAATTGCCGGCGGCGGGGGGGAATGGCGGTGACCCAGAAATACCGGCGGCGATGAGAGAGCATATAATAGGGATGGGGGGGTACGGAATACAACTGATA
ATCGAGAAGGTGTTGACGGCGACGGACTTGAGGACGGATCAGGGGCGGCTGTCGCTGCCGCCGAAGAAGCTGCGGGGGGAGTTTCTGACGGCGGCGGAGGAGAGGTTTCT
GGTGCGGCGCGGCGGCGAGGGGGAGACGGCGCTGAACTACATAGACACCATAATTTTGGGGCCGGATCTAAGAGAGAGCGCAATCCGGTTCAAGAAGTGGCGAATTGGGG
CAAAATACGCCAATTGTTTGATGAATAAATGGAACTCATTTGCCAGAGCTCACCACCTGAAGGCCGGAAACACTGTG
Protein sequenceShow/hide protein sequence
MVNCGDPGAEITNGDVPGAAETATIVNGGDPGAEIANGDDPGAAEAVAMVNGGDPGAEIANADDPGAAMVNGGDPGAELPAAGGNGGDPEIPAAMREHIIGMGGYGIQLI
IEKVLTATDLRTDQGRLSLPPKKLRGEFLTAAEERFLVRRGGEGETALNYIDTIILGPDLRESAIRFKKWRIGAKYANCLMNKWNSFARAHHLKAGNTV