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MS005266 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005266
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVQ domain-containing protein
Genome locationscaffold83:426413..426781
RNA-Seq ExpressionMS005266
SyntenyMS005266
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599333.1 hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3061.54Show/hide
Query:  MGKCGEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPP-AARAPSSTLL-----LEAIGVPDDRSSL
        MGKCGE N++K+  QSQNPTKVQRKPIKVKYISSPMM+KASNA EFRAIVQQLTGF S +    +NH+PPP AA+ PS++ L     +EA+ + D+ SSL
Subjt:  MGKCGEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPP-AARAPSSTLL-----LEAIGVPDDRSSL

Query:  LHLDEGGCF-GRENDLPNTFLGFQSSFLFQ
        L  D+  CF   +N L N F+GFQ+S LFQ
Subjt:  LHLDEGGCF-GRENDLPNTFLGFQSSFLFQ

KGN60779.1 hypothetical protein Csa_019238 [Cucumis sativus]9.8e-2455Show/hide
Query:  MGKCGEMNQYKNH------SQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHR-PPPAARAPSSTL-----LLEAIGVP
        MGKCGE NQY NH      SQ+QNPTKVQRKPIKVKYISSPMM+KASNA+EFRAIVQQLTGF+S+      N +     AR PS+        +E +   
Subjt:  MGKCGEMNQYKNH------SQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHR-PPPAARAPSSTL-----LLEAIGVP

Query:  DDR--SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ
        DD    SLL  D  GCF  +N+   LPN  + FQSS  FQ
Subjt:  DDR--SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ

MBA0699683.1 hypothetical protein [Gossypium aridum]2.3e-0946.79Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL
        +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N              LL+A   PDD SS+   DEG  +     +     
Subjt:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL

Query:  GFQSSFLFQ
        GFQS F+F+
Subjt:  GFQSSFLFQ

MBA0728360.1 hypothetical protein [Gossypium laxum]4.0e-0946.79Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL
        +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N              LL+A   PDD SS+   DEG  +     +  T  
Subjt:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL

Query:  GFQSSFLFQ
        GFQS  +F+
Subjt:  GFQSSFLFQ

XP_021282108.1 uncharacterized protein LOC110414990 [Herrania umbratica]6.6e-1244.03Show/hide
Query:  GEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTN----------------HRPPPAARAPSSTLLLEAIGVP
        G++  ++ H +S+NPTK ++ PIK+KYISSPMMVKASNA EFRAIVQ+LTG NSD    P+N                H   P A+    +LL       
Subjt:  GEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTN----------------HRPPPAARAPSSTLLLEAIGVP

Query:  DDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLF
        DD SS L  DEG  +     +P    GFQS F+F
Subjt:  DDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLF

TrEMBL top hitse value%identityAlignment
A0A0A0LIA7 VQ domain-containing protein4.7e-2455Show/hide
Query:  MGKCGEMNQYKNH------SQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHR-PPPAARAPSSTL-----LLEAIGVP
        MGKCGE NQY NH      SQ+QNPTKVQRKPIKVKYISSPMM+KASNA+EFRAIVQQLTGF+S+      N +     AR PS+        +E +   
Subjt:  MGKCGEMNQYKNH------SQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHR-PPPAARAPSSTL-----LLEAIGVP

Query:  DDR--SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ
        DD    SLL  D  GCF  +N+   LPN  + FQSS  FQ
Subjt:  DDR--SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ

A0A6J1A533 uncharacterized protein LOC1104149903.2e-1244.03Show/hide
Query:  GEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTN----------------HRPPPAARAPSSTLLLEAIGVP
        G++  ++ H +S+NPTK ++ PIK+KYISSPMMVKASNA EFRAIVQ+LTG NSD    P+N                H   P A+    +LL       
Subjt:  GEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTN----------------HRPPPAARAPSSTLLLEAIGVP

Query:  DDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLF
        DD SS L  DEG  +     +P    GFQS F+F
Subjt:  DDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLF

A0A7J8YJB9 VQ domain-containing protein1.1e-0946.79Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL
        +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N              LL+A   PDD SS+   DEG  +     +     
Subjt:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL

Query:  GFQSSFLFQ
        GFQS F+F+
Subjt:  GFQSSFLFQ

A0A7J9AWI4 VQ domain-containing protein1.9e-0946.79Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL
        +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N              LL+A   PDD SS+   DEG  +     +  T  
Subjt:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL

Query:  GFQSSFLFQ
        GFQS  +F+
Subjt:  GFQSSFLFQ

A0A7J9MSD9 VQ domain-containing protein1.1e-0946.79Show/hide
Query:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL
        +S+ P K+   P+KVKYISSPMMVKASNA EFRAIVQ+LTG +SD    P N              LL+A   PDD SS+   DEG  +     +     
Subjt:  QSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFL

Query:  GFQSSFLFQ
        GFQS F+F+
Subjt:  GFQSSFLFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACCCCACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGAT
GGTGAAAGCAAGCAATGCAATGGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCGCCC
GAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCC
AACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACCCCACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGAT
GGTGAAAGCAAGCAATGCAATGGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCGCCC
GAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCC
AACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAA
Protein sequenceShow/hide protein sequence
MGKCGEMNQYKNHSQSQNPTKVQRKPIKVKYISSPMMVKASNAMEFRAIVQQLTGFNSDATISPTNHRPPPAARAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLP
NTFLGFQSSFLFQ