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MS005267 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005267
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVQ domain-containing protein
Genome locationscaffold83:431675..432073
RNA-Seq ExpressionMS005267
SyntenyMS005267
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]1.5e-2250Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA---VSA
        M+NL  +LP    H + SQ  N+        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD       F    ++ NHAFYPPPPS++   VS 
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA---VSA

Query:  DPKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQA-SCVNTY
        DP+  YG  SG      ++ +  EG + + EM+G FSGFQA SCVN +
Subjt:  DPKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQA-SCVNTY

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]1.4e-2048.94Show/hide
Query:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA--VSADPKGYYG-
        +LP +  H + SQ  N+A ++   KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S       ++ NH FYPPPPS++  VS DPK  YG 
Subjt:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA--VSADPKGYYG-

Query:  -----LVSGKVGELGEGCFRQDEMQ--GFSGFQA-SCVNTY
             ++  ++ +  EG + + EM+   FSGFQA SCVN +
Subjt:  -----LVSGKVGELGEGCFRQDEMQ--GFSGFQA-SCVNTY

XP_022142960.1 sigma factor binding protein 1, chloroplastic-like [Momordica charantia]1.9e-5298.15Show/hide
Query:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGELGEGCFRQDEMQGFSGF
        MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGG EEELNHAFYPPPPSTAVS DPKGYYGLVSGKVGELGEGCFRQDEMQGFSGF
Subjt:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGELGEGCFRQDEMQGFSGF

Query:  QASCVNTY
        QASCVNTY
Subjt:  QASCVNTY

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]1.1e-1749.29Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYY
        M+NL +SLP+H RH +   +  RA M  KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+        +E NHAF  PP ST  S D K  Y
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYY

Query:  GLVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY
         LVS        VGE+ +  +         GFQAS V+ +
Subjt:  GLVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]2.7e-1960.55Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAV-SADPKGYYGLVSGKVGELGEGCFRQDEMQG-FSGF
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SP DAF+  A     E+ N  FYPPP S A  S DPK  Y   SG V    +G     EM+G FSGF
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAV-SADPKGYYGLVSGKVGELGEGCFRQDEMQG-FSGF

Query:  QA-SCVNTY
        QA SCVNT+
Subjt:  QA-SCVNTY

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein6.9e-2148.94Show/hide
Query:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA--VSADPKGYYG-
        +LP +  H + SQ  N+A ++   KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S       ++ NH FYPPPPS++  VS DPK  YG 
Subjt:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA--VSADPKGYYG-

Query:  -----LVSGKVGELGEGCFRQDEMQ--GFSGFQA-SCVNTY
             ++  ++ +  EG + + EM+   FSGFQA SCVN +
Subjt:  -----LVSGKVGELGEGCFRQDEMQ--GFSGFQA-SCVNTY

A0A3P6BV84 VQ domain-containing protein (Fragment)9.7e-0743.64Show/hide
Query:  QAPNRAIMEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADP--KGYYGLVSGKVGEL-GEGCFR
        Q   RA   KPIKV+YISNPM VK    S+FRE+VQ LTGQ++ D   E P F       +H+  PPPP T     P  + +  LV+G    L GE  F 
Subjt:  QAPNRAIMEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADP--KGYYGLVSGKVGEL-GEGCFR

Query:  QDEMQGFSGF
            +GFSG+
Subjt:  QDEMQGFSGF

A0A5A7VDH6 VQ motif-containing protein7.4e-2350Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA---VSA
        M+NL  +LP    H + SQ  N+        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD       F    ++ NHAFYPPPPS++   VS 
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTA---VSA

Query:  DPKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQA-SCVNTY
        DP+  YG  SG      ++ +  EG + + EM+G FSGFQA SCVN +
Subjt:  DPKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQA-SCVNTY

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like9.0e-5398.15Show/hide
Query:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGELGEGCFRQDEMQGFSGF
        MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGG EEELNHAFYPPPPSTAVS DPKGYYGLVSGKVGELGEGCFRQDEMQGFSGF
Subjt:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGELGEGCFRQDEMQGFSGF

Query:  QASCVNTY
        QASCVNTY
Subjt:  QASCVNTY

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like5.5e-1849.29Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYY
        M+NL +SLP+H RH +   +  RA M  KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+        +E NHAF  PP ST  S D K  Y
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYY

Query:  GLVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY
         LVS        VGE+ +  +         GFQAS V+ +
Subjt:  GLVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic4.4e-0463.89Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPD
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPD

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.5e-0439.6Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSG
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    ++  H   PP  + A     +  +G       E    E  F  D+M  GFSG
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSG

Query:  F
        F
Subjt:  F

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.1e-0563.89Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPD
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPD

AT3G56710.1 sigma factor binding protein 11.1e-0539.6Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSG
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    ++  H   PP  + A     +  +G       E    E  F  D+M  GFSG
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSG

Query:  F
        F
Subjt:  F


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACCTTAGAAGAAGCCTTCCTGATCATCATCGTCATCACCAAAGAAGCCAAGCTCCCAATAGAGCAATAATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAA
CCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAG
AAGAAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGGCTGACCCTAAGGGTTATTATGGCTTGGTCTCCGGCAAGGTCGGCGAGCTCGGC
GAAGGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCGTTAATACATAT
mRNA sequenceShow/hide mRNA sequence
ATGGATAACCTTAGAAGAAGCCTTCCTGATCATCATCGTCATCACCAAAGAAGCCAAGCTCCCAATAGAGCAATAATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAA
CCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAG
AAGAAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGGCTGACCCTAAGGGTTATTATGGCTTGGTCTCCGGCAAGGTCGGCGAGCTCGGC
GAAGGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCGTTAATACATAT
Protein sequenceShow/hide protein sequence
MDNLRRSLPDHHRHHQRSQAPNRAIMEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEEELNHAFYPPPPSTAVSADPKGYYGLVSGKVGELG
EGCFRQDEMQGFSGFQASCVNTY