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MS005278 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005278
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAlba domain-containing protein
Genome locationscaffold83:545451..546832
RNA-Seq ExpressionMS005278
SyntenyMS005278
Gene Ontology termsGO:0048235 - pollen sperm cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586319.1 hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sororia]7.7e-5096.58Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
        TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS

Query:  EKFDSLMTAATAAAPEA
        EKFDSLMTAAT  A  A
Subjt:  EKFDSLMTAATAAAPEA

XP_022143158.1 uncharacterized protein At2g34160 [Momordica charantia]2.0e-53100Show/hide
Query:  MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLG
        MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLG
Subjt:  MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLG

Query:  KSEKFDSLMTAATAAAPEA
        KSEKFDSLMTAATAAAPEA
Subjt:  KSEKFDSLMTAATAAAPEA

XP_022938043.1 uncharacterized protein At2g34160-like [Cucurbita moschata]2.2e-4996.58Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
        TIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS

Query:  EKFDSLMTAATAAAPEA
        EKFDSLMTAAT AA  A
Subjt:  EKFDSLMTAATAAAPEA

XP_022965411.1 uncharacterized protein At2g34160-like [Cucurbita maxima]3.5e-5099.12Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
        TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS

Query:  EKFDSLMTAATAAA
        EKFDSLMTAAT AA
Subjt:  EKFDSLMTAATAAA

XP_038877259.1 uncharacterized protein At2g34160-like [Benincasa hispida]2.2e-4998.28Show/hide
Query:  MATIAVSG--ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        MATIAVSG  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
Subjt:  MATIAVSG--ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAATA
        LGKSEKFDSLMTAATA
Subjt:  LGKSEKFDSLMTAATA

TrEMBL top hitse value%identityAlignment
A0A1S3C2U1 uncharacterized protein At2g341601.4e-4997.44Show/hide
Query:  MATIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATA
        VLGKSEKFDSLMTAATA
Subjt:  VLGKSEKFDSLMTAATA

A0A5D3D4G4 Alba DNA/RNA-binding protein1.4e-4997.44Show/hide
Query:  MATIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATA
        VLGKSEKFDSLMTAATA
Subjt:  VLGKSEKFDSLMTAATA

A0A6J1CQ10 uncharacterized protein At2g341609.5e-54100Show/hide
Query:  MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLG
        MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLG
Subjt:  MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLG

Query:  KSEKFDSLMTAATAAAPEA
        KSEKFDSLMTAATAAAPEA
Subjt:  KSEKFDSLMTAATAAAPEA

A0A6J1FHQ7 uncharacterized protein At2g34160-like1.1e-4996.58Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
        TIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS

Query:  EKFDSLMTAATAAAPEA
        EKFDSLMTAAT AA  A
Subjt:  EKFDSLMTAATAAAPEA

A0A6J1HLL6 uncharacterized protein At2g34160-like1.7e-5099.12Show/hide
Query:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
        TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS
Subjt:  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKS

Query:  EKFDSLMTAATAAA
        EKFDSLMTAAT AA
Subjt:  EKFDSLMTAATAAA

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.2e-3774.77Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL

Query:  MTAATAAAPEA
        M AA     +A
Subjt:  MTAATAAAPEA

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein2.9e-3978.85Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
        A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL

Query:  MTAA
        M AA
Subjt:  MTAA

AT2G34160.1 Alba DNA/RNA-binding protein8.5e-3974.77Show/hide
Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL

Query:  MTAATAAAPEA
        M AA     +A
Subjt:  MTAATAAAPEA

AT3G04620.1 Alba DNA/RNA-binding protein1.2e-4584.82Show/hide
Query:  ATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGK
        AT   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGK
Subjt:  ATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGK

Query:  SEKFDSLMTAAT
        S+KFDSL+   T
Subjt:  SEKFDSLMTAAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGATTGCAGTATCGGGAGCCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCAAACACCAAGAAACCACTATTCTTCTACGTTAACCTCGCTAAGAGGTA
TATTCAACAGCACAATGAGGTTGAGCTTTCTGCCCTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAAAG
TTTTGACTTCTACAGTTGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAATTTGATTCTCTGATGACT
GCGGCCACAGCTGCTGCGCCAGAGGCA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGATTGCAGTATCGGGAGCCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCAAACACCAAGAAACCACTATTCTTCTACGTTAACCTCGCTAAGAGGTA
TATTCAACAGCACAATGAGGTTGAGCTTTCTGCCCTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAAAG
TTTTGACTTCTACAGTTGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAATTTGATTCTCTGATGACT
GCGGCCACAGCTGCTGCGCCAGAGGCA
Protein sequenceShow/hide protein sequence
MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT
AATAAAPEA