; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005290 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005290
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpathogenesis-related protein PR-4-like
Genome locationscaffold83:605959..607529
RNA-Seq ExpressionMS005290
SyntenyMS005290
Gene Ontology termsGO:0042742 - defense response to bacterium (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0004540 - ribonuclease activity (molecular function)
InterPro domainsIPR001153 - Barwin domain
IPR018226 - Barwin, conserved site
IPR036908 - RlpA-like domain superfamily
IPR044301 - Pathogenesis-related protein-4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063600.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa]4.2e-6682.07Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        MET+S  M+  +ML C  ++ +S+ QSGSNVRAT+NLYNAPQINWDLNAVSAFC+TWDAN+PLEWRSQYGWTAFCGP+GPHGQDSCG CLLVTN +TG Q
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        +TVRIVDQCSNGGLDLDVGVFQSLDT+GNGNANGFLTVNYDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

KAG6599313.1 Wound-induced protein WIN1, partial [Cucurbita argyrosperma subsp. sororia]5.7e-6380Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        METK L    +I L C  ++ +S+ QS SNVRAT+NLYNAP+INWD NAVSAFC+TWDA+QPLEWRSQYGWTAFCGPVGP G+DSCG CLLVTNTETGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        QTVRIVDQC+NGGLDLDVGVF+SLDT+GNGNANGFLTV+YDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

XP_004139240.1 pathogenesis-related protein PR-4 [Cucumis sativus]1.9e-6381.38Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        ME KSL  +  +ML C  ++ +S+ QSGSNVRAT+NLYNAPQINWDLNAVSAFC+TWDANQPLEWRSQYGWTAFCGP+GP GQ SCG CLLVTN +TGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        QTVRIVDQCSNGGLDLDVGVFQSLDT+GNG ANGFLT+NYDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

XP_022143020.1 pathogenesis-related protein PR-4-like [Momordica charantia]6.0e-81100Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

XP_022946139.1 pathogenesis-related protein PR-4-like [Cucurbita moschata]7.4e-6380.69Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        METK L    +I L C  ++ +S+ QS SNVRAT+NLYNAP+INWDLNAVSAFC+TWDA+QPLEWRSQYGWTAFCGPVGP G+DSCG CLLVTNTETGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        Q VRIVDQC+NGGLDLDVGVFQSLDT+GNGNANGFLTV+YDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

TrEMBL top hitse value%identityAlignment
A0A0A0LG74 Barwin domain-containing protein1.3e-6088.71Show/hide
Query:  VSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVF
        +S+ QSGSNVRAT+NLYNAPQINWDLNAVSAFC+TWDANQPLEWRSQYGWTAFCGP+GP GQ SCG CLLVTN +TGAQQTVRIVDQCSNGGLDLDVGVF
Subjt:  VSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVF

Query:  QSLDTNGNGNANGFLTVNYDFVNC
        QSLDT+GNG ANGFLT+NYDFVNC
Subjt:  QSLDTNGNGNANGFLTVNYDFVNC

A0A5D3D4F5 Pathogenesis-related protein PR-4-like2.0e-6682.07Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        MET+S  M+  +ML C  ++ +S+ QSGSNVRAT+NLYNAPQINWDLNAVSAFC+TWDAN+PLEWRSQYGWTAFCGP+GPHGQDSCG CLLVTN +TG Q
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        +TVRIVDQCSNGGLDLDVGVFQSLDT+GNGNANGFLTVNYDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

A0A6J1CMK0 pathogenesis-related protein PR-4-like2.9e-81100Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

A0A6J1G2Y5 pathogenesis-related protein PR-4-like3.6e-6380.69Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        METK L    +I L C  ++ +S+ QS SNVRAT+NLYNAP+INWDLNAVSAFC+TWDA+QPLEWRSQYGWTAFCGPVGP G+DSCG CLLVTNTETGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        Q VRIVDQC+NGGLDLDVGVFQSLDT+GNGNANGFLTV+YDFVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

A0A6J1KG47 pathogenesis-related protein PR-4-like3.6e-6380.69Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        METK L    +I L C  ++ +S+ QS SNVRAT+NLYNAP+INWDLNAVSAFC+TWDA+QPLEWRSQYGWTAFCGPVGP GQDSCG CLLVTNTETGAQ
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
        QTVRIVDQC+NGGLDLDVGVFQSLDT+GNGNANGFL V+YDFV C
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

SwissProt top hitse value%identityAlignment
P09761 Wound-induced protein WIN18.8e-5173.11Show/hide
Query:  SGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVFQSLDT
        S  NVRATY++YN   + WDLNAVSA+C+TWDAN+PL WR +YGWTAFCGPVGP G+DSCG+CL VTNT TGAQ TVRIVDQCSNGGLDLDV VF+ +DT
Subjt:  SGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVFQSLDT

Query:  NGNGNANGFLTVNYDFVNC
        +GNGN  G L VNY FV+C
Subjt:  NGNGNANGFLTVNYDFVNC

P09762 Wound-induced protein WIN22.3e-5172.13Show/hide
Query:  EGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVFQS
        +G S  NVRATY++YN   + WDLNAVSA+C+TWDAN+P  WRS+YGWTAFCGPVGP G+DSCG+CL VTNT TGAQ TVRIVDQCSNGGLDLD+ VFQ 
Subjt:  EGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVFQS

Query:  LDTNGNGNANGFLTVNYDFVNC
        +DT+G GN  G L VNY FVNC
Subjt:  LDTNGNGNANGFLTVNYDFVNC

P29062 Pathogenesis-related protein PR-4A1.0e-5165.52Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        ME  +   L + +L   +V+ ++  QS +NVR+TY+LYN   INWDL A SAFCATWDA++PL WR +YGWTAFCGP GP GQDSCG+CL VTNT TG Q
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
         TVRIVDQCSNGGLDLDV VF  LDTNG G   G LTVNY+FVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

P29063 Pathogenesis-related protein PR-4B1.5e-5064.14Show/hide
Query:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ
        ME  +   L + +L   +++ ++  QS +NVR+TY+LYN   INWDL A SAFCATWDA++PL WR +YGWTAFCGP GP GQDSCG+CL VTNT TG Q
Subjt:  METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQ

Query:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC
         TVRIVDQCSNGGLDLDV VF  LDTNG G   G L VNY+FVNC
Subjt:  QTVRIVDQCSNGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC

P32045 Pathogenesis-related protein P28.3e-4967.97Show/hide
Query:  LVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLD
        +++ V+  QS +NVRATY+LYN   INWDL   S +CATWDA++PLEWR +YGWTAFCGP GP GQ SCG+CL VTNT TG Q+TVRIVDQC NGGLDLD
Subjt:  LVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLD

Query:  VGVFQSLDTNGNGNANGFLTVNYDFVNC
        V VF  LDTNG G   G L VNY+FVNC
Subjt:  VGVFQSLDTNGNGNANGFLTVNYDFVNC

Arabidopsis top hitse value%identityAlignment
AT3G04720.1 pathogenesis-related 43.9e-4666.94Show/hide
Query:  GQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVFQSL
        G+S SNVRATY+ YN  Q NWDL AVSA+C+TWDA++P  WRS+YGWTAFCGP GP GQ SCG+CL V NT T A  TVRIVDQCSNGGLDLDV +F  +
Subjt:  GQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCSNGGLDLDVGVFQSL

Query:  DTNGNGNANGFLTVNYDFVNC
        DT+G G   G L V+Y FV+C
Subjt:  DTNGNGNANGFLTVNYDFVNC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACAAAAAGTTTGAGGATGTTGGGTATGATAATGTTGTGTTGTTGTCTTGTAATTAGAGTGTCGGAAGGGCAAAGTGGGAGCAATGTGAGAGCAACATATAACTT
GTACAATGCTCCACAGATCAATTGGGATTTGAATGCTGTGAGTGCTTTCTGTGCAACATGGGATGCCAATCAGCCTTTAGAGTGGCGCAGCCAATATGGATGGACTGCCT
TCTGTGGCCCTGTTGGCCCCCATGGCCAGGATTCTTGTGGCCAATGCCTACTGGTGACCAACACTGAAACAGGAGCTCAACAAACAGTGAGAATTGTGGATCAGTGTAGC
AATGGAGGCCTGGATTTGGATGTTGGAGTGTTCCAAAGTCTCGACACCAATGGAAATGGCAATGCTAATGGCTTCCTCACAGTCAACTATGATTTTGTCAATTGT
mRNA sequenceShow/hide mRNA sequence
ATGGAGACAAAAAGTTTGAGGATGTTGGGTATGATAATGTTGTGTTGTTGTCTTGTAATTAGAGTGTCGGAAGGGCAAAGTGGGAGCAATGTGAGAGCAACATATAACTT
GTACAATGCTCCACAGATCAATTGGGATTTGAATGCTGTGAGTGCTTTCTGTGCAACATGGGATGCCAATCAGCCTTTAGAGTGGCGCAGCCAATATGGATGGACTGCCT
TCTGTGGCCCTGTTGGCCCCCATGGCCAGGATTCTTGTGGCCAATGCCTACTGGTGACCAACACTGAAACAGGAGCTCAACAAACAGTGAGAATTGTGGATCAGTGTAGC
AATGGAGGCCTGGATTTGGATGTTGGAGTGTTCCAAAGTCTCGACACCAATGGAAATGGCAATGCTAATGGCTTCCTCACAGTCAACTATGATTTTGTCAATTGT
Protein sequenceShow/hide protein sequence
METKSLRMLGMIMLCCCLVIRVSEGQSGSNVRATYNLYNAPQINWDLNAVSAFCATWDANQPLEWRSQYGWTAFCGPVGPHGQDSCGQCLLVTNTETGAQQTVRIVDQCS
NGGLDLDVGVFQSLDTNGNGNANGFLTVNYDFVNC