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MS005307 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005307
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNeurogenic locus notch-like protein
Genome locationscaffold83:767511..768659
RNA-Seq ExpressionMS005307
SyntenyMS005307
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063619.1 MtN26 [Cucumis melo var. makuwa]9.4e-5978.23Show/hide
Query:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT
        +KVCEEVNCGKGNCT    + PFGF C CD GWKRTRDNDDDL FLPCVI NC+LNYGCQPAPPPVP+K VP+NSSFF+PCYWAYCGEG+CV+NKTY HT
Subjt:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT

Query:  CSCNPGYYNLLNTSAFPCYSDCKI
        C C PG+YNLLN S FPCY+DC I
Subjt:  CSCNPGYYNLLNTSAFPCYSDCKI

XP_016901498.1 PREDICTED: uncharacterized protein LOC103499567 [Cucumis melo]9.4e-5978.23Show/hide
Query:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT
        +KVCEEVNCGKGNCT    + PFGF C CD GWKRTRDNDDDL FLPCVI NC+LNYGCQPAPPPVP+K VP+NSSFF+PCYWAYCGEG+CV+NKTY HT
Subjt:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT

Query:  CSCNPGYYNLLNTSAFPCYSDCKI
        C C PG+YNLLN S FPCY+DC I
Subjt:  CSCNPGYYNLLNTSAFPCYSDCKI

XP_022143152.1 uncharacterized protein LOC111013088 [Momordica charantia]2.3e-7398.37Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
        EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVI NCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC

Query:  SCNPGYYNLLNTSAFPCYSDCKI
        SCNPGYYNLLNTSAFPCYSDC I
Subjt:  SCNPGYYNLLNTSAFPCYSDCKI

XP_023521139.1 uncharacterized protein LOC111784759 [Cucurbita pepo subsp. pepo]7.9e-5879.67Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
        +K+C+EVNCGKGNCT D  YPF F C CDSGWKRTRD+DDDLTFLPCVI NCSL+YGCQ APPPVPDK VPRNSSFF+PCYWAYCGEG C KN TY HTC
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC

Query:  SCNPGYYNLLNTSAFPCYSDCKI
         C+ G+YNLLN SAFPCYSDC I
Subjt:  SCNPGYYNLLNTSAFPCYSDCKI

XP_038891234.1 uncharacterized protein LOC120080588 [Benincasa hispida]1.1e-6283.74Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
        +K+CEEVNCGKGNCTADAGYPFGF C C+SGWKRTR++DDDLTFLPCVI NCSLNYGCQPAPPPVP+K VP NSSFFD CYWAYCGEG CVKN+TY HTC
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC

Query:  SCNPGYYNLLNTSAFPCYSDCKI
         C  GYYNLLN SAFPCYSDC I
Subjt:  SCNPGYYNLLNTSAFPCYSDCKI

TrEMBL top hitse value%identityAlignment
A0A1S4DZT9 uncharacterized protein LOC1034995674.5e-5978.23Show/hide
Query:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT
        +KVCEEVNCGKGNCT    + PFGF C CD GWKRTRDNDDDL FLPCVI NC+LNYGCQPAPPPVP+K VP+NSSFF+PCYWAYCGEG+CV+NKTY HT
Subjt:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT

Query:  CSCNPGYYNLLNTSAFPCYSDCKI
        C C PG+YNLLN S FPCY+DC I
Subjt:  CSCNPGYYNLLNTSAFPCYSDCKI

A0A5A7VDL6 MtN264.5e-5978.23Show/hide
Query:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT
        +KVCEEVNCGKGNCT    + PFGF C CD GWKRTRDNDDDL FLPCVI NC+LNYGCQPAPPPVP+K VP+NSSFF+PCYWAYCGEG+CV+NKTY HT
Subjt:  EKVCEEVNCGKGNCTADAGY-PFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHT

Query:  CSCNPGYYNLLNTSAFPCYSDCKI
        C C PG+YNLLN S FPCY+DC I
Subjt:  CSCNPGYYNLLNTSAFPCYSDCKI

A0A6J1CPY4 uncharacterized protein LOC1110130881.1e-7398.37Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
        EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVI NCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC

Query:  SCNPGYYNLLNTSAFPCYSDCKI
        SCNPGYYNLLNTSAFPCYSDC I
Subjt:  SCNPGYYNLLNTSAFPCYSDCKI

A0A6J1FHH1 uncharacterized protein LOC1114440155.0e-5879.67Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
        +K+C+EVNCGKGNCT D  YPF F C CDSGWKRTRD+DDDLTFLPCVI NCSL+YGCQ APPPVPDK VPRNSSFF+PCYWAYCGEG C KN TY HTC
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC

Query:  SCNPGYYNLLNTSAFPCYSDCKI
         C  G+YNLLN SAFPCYSDC I
Subjt:  SCNPGYYNLLNTSAFPCYSDCKI

A0A6J1HQE9 uncharacterized protein LOC1114656665.0e-5879.67Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC
        +K+C+EVNCGKGNCT D  YPF F C CDSGWKRTRD+DDDLTFLPCVI NCSL+YGCQ APPPVPDK VPRNSSFF+PCYWAYCGEG C KN TY HTC
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTC

Query:  SCNPGYYNLLNTSAFPCYSDCKI
         C  G+YNLLN SAFPCYSDC I
Subjt:  SCNPGYYNLLNTSAFPCYSDCKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G14746.1 CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).5.4e-2840Show/hide
Query:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRN--SSFFDPCYWAYCGEGECVKNKTYTH
        + +C+EV CGKG C A +   F + C C+ GWK+    D  L FLPC+  NC+ +  C  A  P   K  P++  +SFFDPC W  CG G C  +  + +
Subjt:  EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRN--SSFFDPCYWAYCGEGECVKNKTYTH

Query:  TCSCNPGYYNLLNTSAFPCYSDCKI
        +C+C  GY NL+N + FPC   C +
Subjt:  TCSCNPGYYNLLNTSAFPCYSDCKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGAAAGTGTGCGAAGAAGTGAACTGCGGGAAGGGAAATTGCACGGCGGACGCCGGATATCCGTTCGGATTCATCTGCAACTGCGATTCCGGCTGGAAGCGGACTCGCGA
CAACGACGACGATCTCACCTTCCTCCCTTGCGTCATTGCTAATTGTTCTCTCAACTACGGCTGCCAGCCGGCGCCGCCGCCGGTGCCGGACAAGACCGTTCCCAGAAACT
CCTCCTTCTTCGATCCTTGCTACTGGGCTTACTGTGGAGAAGGAGAGTGTGTTAAGAACAAAACTTACACACACACATGTTCATGCAACCCTGGCTACTACAATCTCCTC
AACACCTCTGCCTTCCCTTGCTATAGTGATTGTAAGATT
mRNA sequenceShow/hide mRNA sequence
GAGAAAGTGTGCGAAGAAGTGAACTGCGGGAAGGGAAATTGCACGGCGGACGCCGGATATCCGTTCGGATTCATCTGCAACTGCGATTCCGGCTGGAAGCGGACTCGCGA
CAACGACGACGATCTCACCTTCCTCCCTTGCGTCATTGCTAATTGTTCTCTCAACTACGGCTGCCAGCCGGCGCCGCCGCCGGTGCCGGACAAGACCGTTCCCAGAAACT
CCTCCTTCTTCGATCCTTGCTACTGGGCTTACTGTGGAGAAGGAGAGTGTGTTAAGAACAAAACTTACACACACACATGTTCATGCAACCCTGGCTACTACAATCTCCTC
AACACCTCTGCCTTCCCTTGCTATAGTGATTGTAAGATT
Protein sequenceShow/hide protein sequence
EKVCEEVNCGKGNCTADAGYPFGFICNCDSGWKRTRDNDDDLTFLPCVIANCSLNYGCQPAPPPVPDKTVPRNSSFFDPCYWAYCGEGECVKNKTYTHTCSCNPGYYNLL
NTSAFPCYSDCKI