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MS005318 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005318
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationscaffold201:49021..49119
RNA-Seq ExpressionMS005318
SyntenyMS005318
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QZP42325.1 RNA polymerase beta' subunit [Leptopus cordifolius]6.5e-0777.14Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSRKRRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
YP_009371085.1 RpoC1 [Vernicia fordii]1.4e-0674.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
YP_009561457.1 RpoC1 [Deutzianthus tonkinensis]1.4e-0674.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
YP_009696830.1 RpoC1 [Cornus oblonga]1.4e-0674.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
YP_010145876.1 RNA polymerase beta' subunit [Vernicia montana]1.4e-0674.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
TrEMBL top hitse value%identityAlignment
A0A1S5S0C7 DNA-directed RNA polymerase subunit gamma9.2e-0777.14Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR RRYQMGYIK V  + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
A0A1X9RPG5 DNA-directed RNA polymerase subunit beta'7.0e-0774.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
A0A410P9R5 DNA-directed RNA polymerase subunit beta'7.0e-0774.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
A0A5C0Q500 DNA-directed RNA polymerase subunit beta'7.0e-0774.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
A0A7T8E4T4 RNA polymerase beta' subunit7.0e-0774.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR+RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
SwissProt top hitse value%identityAlignment
A1XGM9 DNA-directed RNA polymerase subunit beta'5.5e-0974.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
A9L987 DNA-directed RNA polymerase subunit beta'5.5e-0974.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
Q09FX0 DNA-directed RNA polymerase subunit beta'5.5e-0974.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
Q09G55 DNA-directed RNA polymerase subunit beta'5.5e-0974.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
Q8HVY4 DNA-directed RNA polymerase subunit beta'7.2e-0971.43Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIK--TVIKHIWFL
        KFCEQCGVEF+DSR RRYQMGYIK   ++ H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIK--TVIKHIWFL
Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein5.1e-1074.29Show/hide
Query:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL
        KFCEQCGVEFVDSR RRYQMGYIK    + H+W+L
Subjt:  KFCEQCGVEFVDSRKRRYQMGYIKTV--IKHIWFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGAAACGAAGATATCAAATGGGCTATATCAAAACAGTTATCAAACATATATGGTTTTTA
mRNA sequenceShow/hide mRNA sequence
AAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGAAACGAAGATATCAAATGGGCTATATCAAAACAGTTATCAAACATATATGGTTTTTA
Protein sequenceShow/hide protein sequence
KFCEQCGVEFVDSRKRRYQMGYIKTVIKHIWFL