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MS005320 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005320
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold201:59550..59884
RNA-Seq ExpressionMS005320
SyntenyMS005320
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN67224.1 hypothetical protein VITISV_029053 [Vitis vinifera]1.1e-1339.62Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SNM+E P+  +LD F  S  W  +F +     L +  S ++PI+L ++ F W  +PFRFE++  Q P F  + K WW E    GW  + FM KLQ  + N
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNK
        L++WNK
Subjt:  LRKWNK

CAN77340.1 hypothetical protein VITISV_038117 [Vitis vinifera]4.9e-1440.57Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SNM+E P+  +LD F  S  W  +F +     L +  S ++PI+L ++ F WG +PFRFE++  Q P F  +   WW ES   GW  + FM KLQ  K  
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNK
        L++WNK
Subjt:  LRKWNK

RVW39064.1 hypothetical protein CK203_084174 [Vitis vinifera]4.4e-1540.54Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SNM+E P+  +LD F  S  W  +F +     L +  S ++PI+L ++ F W  +PFRFE++  Q P F  + K WW E    GW  + FM KLQ  + N
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNKEVLET
        L++WNK  LET
Subjt:  LRKWNKEVLET

VVA25489.1 Hypothetical predicted protein, partial [Prunus dulcis]8.3e-1439.29Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SN RE  +  +LD F  S+ W D F  VK   L +  S + PI+L +S   WG  PFRFE++  + P F    K WW E   +GW  Y F  +L+  K+ 
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNKEVLETL
        ++ WNKEV   L
Subjt:  LRKWNKEVLETL

XP_020420593.1 uncharacterized protein LOC18774736 [Prunus persica]1.3e-1439.29Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SN RE  +  KLD F  S++W D F  VK   L +    + PI L +S+  WG  PFRFE++    P+F    K+WW E   +GW  Y F  +L+  K+ 
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNKEVLETL
        ++ WNKEV   L
Subjt:  LRKWNKEVLETL

TrEMBL top hitse value%identityAlignment
A0A438DUB4 DUF4283 domain-containing protein2.1e-1540.54Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SNM+E P+  +LD F  S  W  +F +     L +  S ++PI+L ++ F W  +PFRFE++  Q P F  + K WW E    GW  + FM KLQ  + N
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNKEVLET
        L++WNK  LET
Subjt:  LRKWNKEVLET

A0A5E4FED8 Reverse transcriptase domain-containing protein (Fragment)4.0e-1439.29Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SN RE  +  +LD F  S+ W D F  VK   L +  S + PI+L +S   WG  PFRFE++  + P F    K WW E   +GW  Y F  +L+  K+ 
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNKEVLETL
        ++ WNKEV   L
Subjt:  LRKWNKEVLETL

A5AWB2 Reverse transcriptase domain-containing protein5.2e-1439.62Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SNM+E P+  +LD F  S  W  +F +     L +  S ++PI+L ++ F W  +PFRFE++  Q P F  + K WW E    GW  + FM KLQ  + N
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNK
        L++WNK
Subjt:  LRKWNK

A5BWI2 Reverse transcriptase domain-containing protein2.4e-1440.57Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SNM+E P+  +LD F  S  W  +F +     L +  S ++PI+L ++ F WG +PFRFE++  Q P F  +   WW ES   GW  + FM KLQ  K  
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNK
        L++WNK
Subjt:  LRKWNK

M5W647 Reverse transcriptase domain-containing protein (Fragment)6.2e-1539.29Show/hide
Query:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN
        SN RE  +  KLD F  S++W D F  VK   L +    + PI L +S+  WG  PFRFE++    P+F    K+WW E   +GW  Y F  +L+  K+ 
Subjt:  SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDI-AQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKEN

Query:  LRKWNKEVLETL
        ++ WNKEV   L
Subjt:  LRKWNKEVLETL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAAATATGAGAGAAGAGCCCTTGTTCTCCAAACTAGATCCCTTTTTCGTCTCCAAAAGCTGGCTAGACATATTCTTTGAGGTTAAAGCCTTGAGGCTTCAACAA
ACTCCCTCTTATTATTTCCCTATTCTTTTACGATCAAGTGATTTCTTTTGGGGTTCGAGCCCTTTCAGATTTGAGGATATTGCTCAATCACCATTCTTTCTATCA
AACCTCAAAATATGGTGGAATGAGAGCCCAAGCAGCGGATGGGTTAGCTACAACTTCATGATTAAACTCCAAAACTTCAAAGAGAATCTCAGAAAGTGGAATAAG
GAGGTCTTGGAGACATTA
mRNA sequenceShow/hide mRNA sequence
TCAAATATGAGAGAAGAGCCCTTGTTCTCCAAACTAGATCCCTTTTTCGTCTCCAAAAGCTGGCTAGACATATTCTTTGAGGTTAAAGCCTTGAGGCTTCAACAA
ACTCCCTCTTATTATTTCCCTATTCTTTTACGATCAAGTGATTTCTTTTGGGGTTCGAGCCCTTTCAGATTTGAGGATATTGCTCAATCACCATTCTTTCTATCA
AACCTCAAAATATGGTGGAATGAGAGCCCAAGCAGCGGATGGGTTAGCTACAACTTCATGATTAAACTCCAAAACTTCAAAGAGAATCTCAGAAAGTGGAATAAG
GAGGTCTTGGAGACATTA
Protein sequenceShow/hide protein sequence
SNMREEPLFSKLDPFFVSKSWLDIFFEVKALRLQQTPSYYFPILLRSSDFFWGSSPFRFEDIAQSPFFLSNLKIWWNESPSSGWVSYNFMIKLQNFKENLRKWNK
EVLETL