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MS005323 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005323
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold201:92224..92442
RNA-Seq ExpressionMS005323
SyntenyMS005323
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI41804.1 hypothetical protein CRG98_037804 [Punica granatum]1.9e-1454.93Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
        +NTDGS+  N G AGAGGVI+  DG W++GF  N+GFAT++ AELWG   GL+ AW LG  ++ +E DSE+
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
PKI44165.1 hypothetical protein CRG98_035458 [Punica granatum]8.4e-1552.86Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
        LNTDG++  NPGR+GAGG+++  DG WV G+ +N+G  T+ +AELW ++ GLE+AW LG R++ +E DSE
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
PKI49381.1 hypothetical protein CRG98_030309 [Punica granatum]8.4e-1556.34Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
        LNTDG+A  NPG+AGA G+I+   G W+ GF QN+G  T++ AELW ++ GLELAW L  RKL +E DSE+
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
XP_016178430.1 uncharacterized protein LOC107620837 [Arachis ipaensis]3.8e-1557.14Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
        +NTDG+A  NPG+AG GG+I+  DGSWV  F +NLG  +A  AELWG+  GLE+AW LG RK+ +E DS+
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]4.9e-1559.42Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDS
        LNTDG++  NPG AGAGGV++K DG W   F +N+G ATA+ AELWG+  GLELAW+LG R + +E DS
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDS
TrEMBL top hitse value%identityAlignment
A0A2I0ICU2 RNase H domain-containing protein9.1e-1554.93Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
        +NTDGS+  N G AGAGGVI+  DG W++GF  N+GFAT++ AELWG   GL+ AW LG  ++ +E DSE+
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
A0A2I0IJI8 RNase H domain-containing protein4.1e-1552.86Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
        LNTDG++  NPGR+GAGG+++  DG WV G+ +N+G  T+ +AELW ++ GLE+AW LG R++ +E DSE
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
A0A2I0IZF3 RNase H domain-containing protein4.1e-1556.34Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
        LNTDG+A  NPG+AGA G+I+   G W+ GF QN+G  T++ AELW ++ GLELAW L  RKL +E DSE+
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
A0A6N2MDD2 RNase H domain-containing protein3.1e-1557.75Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
        LN DG +  NPG AGAGGVI+   GSW+ GF +N+GF T++TAELW I  GL+LAW  G RK+ +ESDS++
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
A0A6P8E5K3 uncharacterized protein LOC1162123242.4e-1559.42Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDS
        LNTDG++  NPG AGAGGV++K DG W   F +N+G ATA+ AELWG+  GLELAW+LG R + +E DS
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDS
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.8e-1245.07Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
        +NTDG++  NPG A AGGV++   G+W  GF  N+G  +A  AELWG+  GL  AW+    ++ +E DSE+
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEI
Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-1345.71Show/hide
Query:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE
        +NTDG++  NPG A AGGV++  +G+W  GF  N+G  +A  AELWG+  GL  AW+    ++ +E DSE
Subjt:  LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAACACTGATGGCTCAGCTCATGCAAATCCAGGAAGGGCAGGAGCAGGTGGGGTAATTCAGAAGTTTGATGGAAGCTGGGTGAAAGGTTTTCAACAAAACCTT
GGTTTTGCTACAGCAATTACAGCAGAATTGTGGGGAATACAATGTGGGCTTGAGCTTGCCTGGAAGTTGGGTTGTAGAAAACTTCATGTGGAATCAGACTCAGAA
ATTGCGTGC
mRNA sequenceShow/hide mRNA sequence
TTGAACACTGATGGCTCAGCTCATGCAAATCCAGGAAGGGCAGGAGCAGGTGGGGTAATTCAGAAGTTTGATGGAAGCTGGGTGAAAGGTTTTCAACAAAACCTT
GGTTTTGCTACAGCAATTACAGCAGAATTGTGGGGAATACAATGTGGGCTTGAGCTTGCCTGGAAGTTGGGTTGTAGAAAACTTCATGTGGAATCAGACTCAGAA
ATTGCGTGC
Protein sequenceShow/hide protein sequence
LNTDGSAHANPGRAGAGGVIQKFDGSWVKGFQQNLGFATAITAELWGIQCGLELAWKLGCRKLHVESDSEIAC