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MS005328 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005328
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold201:248519..248668
RNA-Seq ExpressionMS005328
SyntenyMS005328
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-0664.71Show/hide
Query:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+S+ T +EENQCLTFI  R S F+RL+IS  KK + S+SAFDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

KAA0040625.1 hypothetical protein E6C27_scaffold262G002040 [Cucumis melo var. makuwa]2.9e-0662.75Show/hide
Query:  RISMVTTKEENQC--LTFIRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC   T+ R S F+RL+IS LKK + S+SAFDRLK+TNDQ
Subjt:  RISMVTTKEENQC--LTFIRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

TYJ99972.1 hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa]3.7e-0664.71Show/hide
Query:  RISMVTTKEENQCLTF--IRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC TF   R S F+RL+IS LKK Q S+S FDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTF--IRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-0664.71Show/hide
Query:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC TFI  R S F+RL+IS  KK + S+SAFDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

TYK29025.1 hypothetical protein E5676_scaffold120G001380 [Cucumis melo var. makuwa]2.2e-0666.67Show/hide
Query:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC TFI  R S F+RL+IS  KK + SSSAFDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

TrEMBL top hitse value%identityAlignment
A0A5A7T146 Retrotransposon gag protein1.1e-0664.71Show/hide
Query:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+S+ T +EENQCLTFI  R S F+RL+IS  KK + S+SAFDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

A0A5A7TGR5 Uncharacterized protein1.4e-0662.75Show/hide
Query:  RISMVTTKEENQC--LTFIRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC   T+ R S F+RL+IS LKK + S+SAFDRLK+TNDQ
Subjt:  RISMVTTKEENQC--LTFIRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

A0A5D3BJM6 Uncharacterized protein1.8e-0664.71Show/hide
Query:  RISMVTTKEENQCLTF--IRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC TF   R S F+RL+IS LKK Q S+S FDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTF--IRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

A0A5D3BX77 Retrotransposon gag protein1.8e-0664.71Show/hide
Query:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC TFI  R S F+RL+IS  KK + S+SAFDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

A0A5D3E0M9 Uncharacterized protein1.1e-0666.67Show/hide
Query:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ
        R+SM T +EENQC TFI  R S F+RL+IS  KK + SSSAFDRLK+TNDQ
Subjt:  RISMVTTKEENQCLTFI--RPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGATTAGTATGGTCACGACGAAAGAAGAAAATCAATGTCTAACATTTATTCGACCTTCAATCTTCCAAAGGTTAAACATCTCAATGTTAAAGAAAACTCAATCT
TCATCATCTGCTTTTGATCGTCTAAAAGTGACGAATGATCAAAAC
mRNA sequenceShow/hide mRNA sequence
AGGATTAGTATGGTCACGACGAAAGAAGAAAATCAATGTCTAACATTTATTCGACCTTCAATCTTCCAAAGGTTAAACATCTCAATGTTAAAGAAAACTCAATCT
TCATCATCTGCTTTTGATCGTCTAAAAGTGACGAATGATCAAAAC
Protein sequenceShow/hide protein sequence
RISMVTTKEENQCLTFIRPSIFQRLNISMLKKTQSSSSAFDRLKVTNDQN