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MS005329 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005329
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein CHROMATIN REMODELING 35-like
Genome locationscaffold201:300907..301245
RNA-Seq ExpressionMS005329
SyntenyMS005329
Gene Ontology termsGO:0080188 - RNA-directed DNA methylation (biological process)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571090.1 Protein CHROMATIN REMODELING 35, partial [Cucurbita argyrosperma subsp. sororia]6.0e-4479.65Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS A FS QKCDTPRQNKMKNSA+I+DYSD FAINNLIDGLDCGQFGSVTKEIE L S KM++LSPYIAKYPTLS+TLFDLGR  EC E  NHQ S LV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

KAG7010907.1 Protein CHROMATIN REMODELING 35, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-4479.65Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS A FS QKCDTPRQNKMKNSA+I+DYSD FAINNLIDGLDCGQFGSVTKEIE L S KM++LSPYIAKYPTLS+TLFDLGR  EC E  NHQ S LV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

XP_022146198.1 protein CHROMATIN REMODELING 35-like [Momordica charantia]5.8e-4787.61Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS AAFS QKCDTPR+NKMKNSARIIDYSD FAIN LIDGLDCGQFGSVTKEIE LAS KMEVLSPYIAKYPTLSS LFDLGRSKEC EVMNHQ SQLV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

XP_022943700.1 protein CHROMATIN REMODELING 35-like [Cucurbita moschata]6.0e-4479.65Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS A FS QKCDTPRQNKMKNSA+I+DYSD FAINNLIDGLDCGQFGSVTKEIE L S KM++LSPYIAKYPTLS+TLFDLGR  EC E  NHQ S LV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

XP_023513053.1 protein CHROMATIN REMODELING 35-like [Cucurbita pepo subsp. pepo]1.7e-4378.76Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS A FS QKCDTPRQNKMKNSA+I+DYSD FAINNLIDGL+CGQFGSVTKEIE L S KM++LSPYIAKYPTLSSTLFDLGR  EC E  NHQ S LV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD A+D
Subjt:  HTLINSEDDYAID

TrEMBL top hitse value%identityAlignment
A0A1S3CDQ4 protein CHROMATIN REMODELING 35-like7.9e-4278.76Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        L S A FS QK DTPRQNKM NSA++IDYSD FAINNLI+GLDCGQFGSVTKEIE L S KM+VLSPYIAKYPTLSS LFDLGRS+EC E MN+Q SQLV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

A0A6J1CXY6 protein CHROMATIN REMODELING 35-like2.8e-4787.61Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS AAFS QKCDTPR+NKMKNSARIIDYSD FAIN LIDGLDCGQFGSVTKEIE LAS KMEVLSPYIAKYPTLSS LFDLGRSKEC EVMNHQ SQLV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

A0A6J1FY61 protein CHROMATIN REMODELING 35-like2.9e-4479.65Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LPS A FS QKCDTPRQNKMKNSA+I+DYSD FAINNLIDGLDCGQFGSVTKEIE L S KM++LSPYIAKYPTLS+TLFDLGR  EC E  NHQ S LV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

A0A6J1JE47 protein CHROMATIN REMODELING 35-like9.3e-4377.88Show/hide
Query:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV
        LP  A FS QKCDTPRQNKM NSA+I+DYSD FAINNLIDGLDCGQFGSVTKEIE L S KM++LSPYIAKYPTLSSTLFDLGR   C E  NHQ S LV
Subjt:  LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLV

Query:  HTLINSEDDYAID
        H LI+ EDD AID
Subjt:  HTLINSEDDYAID

A0A6J1L7H6 protein CHROMATIN REMODELING 35-like2.3e-4177.88Show/hide
Query:  PSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVH
        P     S QKCDTPRQNKMKNSA++IDYSD FAINNLID LDCGQFGSVTKEIEVL S KM++LSPYIAKYPTLSS LF LGRSKEC E M+HQ SQLVH
Subjt:  PSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVH

Query:  -TLINSEDDYAID
          LI+ EDD AID
Subjt:  -TLINSEDDYAID

SwissProt top hitse value%identityAlignment
Q9SIW2 Protein CHROMATIN REMODELING 352.0e-1340.21Show/hide
Query:  DTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVHTLINSEDD
        D P   ++K+SA++IDYS+ FA++N+++ LD G+FGSV+KE+E +A  +M+++   I  YP+L+ T+F      E  + M++Q  Q+V  +IN +DD
Subjt:  DTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVHTLINSEDD

Arabidopsis top hitse value%identityAlignment
AT2G16390.1 SNF2 domain-containing protein / helicase domain-containing protein1.4e-1440.21Show/hide
Query:  DTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVHTLINSEDD
        D P   ++K+SA++IDYS+ FA++N+++ LD G+FGSV+KE+E +A  +M+++   I  YP+L+ T+F      E  + M++Q  Q+V  +IN +DD
Subjt:  DTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVHTLINSEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCCTAGCCTTGCTGCCTTTTCTATCCAAAAATGTGACACACCAAGGCAAAACAAAATGAAGAACTCTGCAAGAATAATTGATTACTCTGATCTGTTTGCTATC
AATAATTTGATCGATGGTTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATTGAAGTCCTTGCTTCCGATAAGATGGAAGTTCTAAGTCCTTACATTGCC
AAGTATCCTACACTGTCAAGTACGCTCTTTGATCTGGGAAGAAGTAAAGAGTGTATAGAGGTTATGAATCATCAAGGTTCCCAATTGGTTCATACTCTCATCAAT
TCGGAGGATGATTATGCCATTGAT
mRNA sequenceShow/hide mRNA sequence
CTTCCTAGCCTTGCTGCCTTTTCTATCCAAAAATGTGACACACCAAGGCAAAACAAAATGAAGAACTCTGCAAGAATAATTGATTACTCTGATCTGTTTGCTATC
AATAATTTGATCGATGGTTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATTGAAGTCCTTGCTTCCGATAAGATGGAAGTTCTAAGTCCTTACATTGCC
AAGTATCCTACACTGTCAAGTACGCTCTTTGATCTGGGAAGAAGTAAAGAGTGTATAGAGGTTATGAATCATCAAGGTTCCCAATTGGTTCATACTCTCATCAAT
TCGGAGGATGATTATGCCATTGAT
Protein sequenceShow/hide protein sequence
LPSLAAFSIQKCDTPRQNKMKNSARIIDYSDLFAINNLIDGLDCGQFGSVTKEIEVLASDKMEVLSPYIAKYPTLSSTLFDLGRSKECIEVMNHQGSQLVHTLIN
SEDDYAID