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MS005332 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005332
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAcyl-[acyl-carrier-protein] hydrolase
Genome locationscaffold201:335269..336121
RNA-Seq ExpressionMS005332
SyntenyMS005332
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016297 - acyl-[acyl-carrier-protein] hydrolase activity (molecular function)
InterPro domainsIPR002864 - Acyl-ACP thioesterase
IPR045023 - Acyl-[acyl-carrier-protein] hydrolase FATA/B


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058801.1 palmitoyl-acyl carrier protein thioesterase [Cucumis melo var. makuwa]1.1e-1960.44Show/hide
Query:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +DIT  +LTM ELL+DG VY+  F  KSYE G D K T+  I N+L ES +NH KSCGL  +G G+T EM KRGLI VVHKLQ+VV  YPS
Subjt:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

KAG6593401.1 Palmitoyl-acyl carrier protein thioesterase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.3e-1652.63Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +IT ++L +EE L+DG VY+  F  +SYE G DNK T+  + N+LQES +NH  SC     GL ++GFG+T EM KR LI VVHKLQ+VV  +PS
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

KGN45333.1 hypothetical protein Csa_015751 [Cucumis sativus]7.1e-1959.34Show/hide
Query:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +DIT  +LTM ELL+DG VY+  F  KSYE G D   T+  I N+LQES +NH KSCGL  +G G+T  M KRGLI VVHKLQ+VV  YPS
Subjt:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

XP_022156309.1 palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Momordica charantia]2.5e-16100Show/hide
Query:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQ
        VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQ
Subjt:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQ

XP_022960310.1 palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita moschata]4.3e-1652.63Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +IT ++L +EE L+DG VY+  F  +SYE G DNK T+  + N+LQES +NH  SC     GL ++GFG+T EM KR LI VVHKLQ+VV  +PS
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

TrEMBL top hitse value%identityAlignment
A0A0A0K767 Acyl-[acyl-carrier-protein] hydrolase3.4e-1959.34Show/hide
Query:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +DIT  +LTM ELL+DG VY+  F  KSYE G D   T+  I N+LQES +NH KSCGL  +G G+T  M KRGLI VVHKLQ+VV  YPS
Subjt:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

A0A5A7UZ85 Acyl-[acyl-carrier-protein] hydrolase5.3e-2060.44Show/hide
Query:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +DIT  +LTM ELL+DG VY+  F  KSYE G D K T+  I N+L ES +NH KSCGL  +G G+T EM KRGLI VVHKLQ+VV  YPS
Subjt:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

A0A6J1DT17 Acyl-[acyl-carrier-protein] hydrolase1.2e-16100Show/hide
Query:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQ
        VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQ
Subjt:  VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQ

A0A6J1H8Q2 Acyl-[acyl-carrier-protein] hydrolase2.1e-1652.63Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +IT ++L +EE L+DG VY+  F  +SYE G DNK T+  + N+LQES +NH  SC     GL ++GFG+T EM KR LI VVHKLQ+VV  +PS
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

A0A6J1KZF4 Acyl-[acyl-carrier-protein] hydrolase2.1e-1652.63Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        +IT ++L +EE L+DG VY+  F  +SYE G DNK T+  + N+LQES +NH  SC     GL ++GFG+T EM KR LI VVHKLQ+VV  +PS
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSC-----GLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

SwissProt top hitse value%identityAlignment
G3ESU9 Acyl-[acyl-carrier-protein] hydrolase FATB1, chloroplastic7.1e-1442.22Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        D+ +  + ++ ++ DG V  H F  +SYE+G D  A++ ++ N LQE+TINH KS GL   GFG T  M K  LI V+ K+Q++V  YP+
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

G3ESV0 Acyl-[acyl-carrier-protein] hydrolase FATB2, chloroplastic (Fragment)9.3e-1445.57Show/hide
Query:  LLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        ++ DG V+   F  +SYE+G D  A++ ++ N LQE+ +NH K+ GL+  GFG T EM KR LI VV K+Q++V  YP+
Subjt:  LLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

Q39513 Palmitoyl-acyl carrier protein thioesterase, chloroplastic7.1e-1441.11Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        D+ +    +  ++ DG V+   F  +SYE+G D  A++ ++ N LQE+ +NH K  GL+  GFG T EM KR LI VV K+Q++V  YP+
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

Q9SJE2 Palmitoyl-acyl carrier protein thioesterase, chloroplastic5.5e-1441.11Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        D+ +    +  ++ DG V+   F  +SYE+G D  A++ ++ N LQE+ +NH K+ GL   GFGST EM K+ LI VV ++Q+VV  YP+
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

Q9SQI3 Palmitoyl-acyl carrier protein thioesterase, chloroplastic5.5e-1441.11Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        D+ +    + +++ DG V+   F  +SYE+G D  A++ ++ N LQE+ INH +S GL   GFG+T EM K+ LI VV ++Q+VV  YP+
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

Arabidopsis top hitse value%identityAlignment
AT1G08510.1 fatty acyl-ACP thioesterases B3.9e-1541.11Show/hide
Query:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        D+ +    +  ++ DG V+   F  +SYE+G D  A++ ++ N LQE+ +NH K+ GL   GFGST EM K+ LI VV ++Q+VV  YP+
Subjt:  DITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

AT3G25110.1 fatA acyl-ACP thioesterase3.8e-1038.2Show/hide
Query:  TLKD-LTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        TL D L +  L +DG  Y+  F  +SYE+G +  AT+ +I N LQE   NH +S G +  GF +T  M K  LI V  ++ + +  YP+
Subjt:  TLKD-LTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS

AT4G13050.1 Acyl-ACP thioesterase7.6e-1135.71Show/hide
Query:  LTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS
        L    L++DG  Y+  F  +SYE+G++  AT+ +I N LQE   NH ++ G +  GF +T+ M K  LI V  ++ + +  YP+
Subjt:  LTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGACATAACTCTCAAGGACTTGACAATGGAAGAATTGCTAGACGATGGTCGAGTTTATGAACATCTCTTCTTTTTCAAATCATATGAGTTGGGACTTGATAAT
AAAGCAACCCTGGTTTCCATTACCAACAAATTACAGGAGTCGACAATCAACCACACGAAAAGTTGTGGGTTAGCGAGGTCAGGATTCGGATCAACAATAGAGATG
GATAAAAGGGGCCTCATATTGGTAGTTCATAAATTGCAACTTGTGGTGGCACACTATCCTTCTGGG
mRNA sequenceShow/hide mRNA sequence
GTTGACATAACTCTCAAGGACTTGACAATGGAAGAATTGCTAGACGATGGTCGAGTTTATGAACATCTCTTCTTTTTCAAATCATATGAGTTGGGACTTGATAAT
AAAGCAACCCTGGTTTCCATTACCAACAAATTACAGGAGTCGACAATCAACCACACGAAAAGTTGTGGGTTAGCGAGGTCAGGATTCGGATCAACAATAGAGATG
GATAAAAGGGGCCTCATATTGGTAGTTCATAAATTGCAACTTGTGGTGGCACACTATCCTTCTGGG
Protein sequenceShow/hide protein sequence
VDITLKDLTMEELLDDGRVYEHLFFFKSYELGLDNKATLVSITNKLQESTINHTKSCGLARSGFGSTIEMDKRGLILVVHKLQLVVAHYPSG