; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005334 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005334
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold201:344374..344643
RNA-Seq ExpressionMS005334
SyntenyMS005334
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011736.1 Epimerase family protein SDR39U1-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.6e-0539.33Show/hide
Query:  LVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL
        + W+PNPSK      FF +LSS              KV + + ++FF  Q LHG+VNT+  I+K+ SFLL P W L    AS+++D+I+
Subjt:  LVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL

XP_022952963.1 epimerase family protein SDR39U1 homolog, chloroplastic-like isoform X1 [Cucurbita moschata]2.6e-0539.33Show/hide
Query:  LVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL
        + W+PNPSK      FF +LSS              KV + + ++FF  Q LHG+VNT+  I+K+ SFLL P W L    AS+++D+I+
Subjt:  LVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL

XP_022968893.1 epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucurbita maxima]4.2e-0842.86Show/hide
Query:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL
        + + W+PNPSK      FF +LSS              KV + +K++FF  Q LHG+VNT+  IQK+SSFLLGPQW      AS+++D+I+
Subjt:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL

XP_023554066.1 epimerase family protein SDR39U1 homolog, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]2.3e-0639.56Show/hide
Query:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL
        + + W+PNPSK      FF +LSS              KV + +K++FF  Q LHG+VNT+  I+K+ SFLLGP W      AS+++D+I+
Subjt:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL

XP_038887741.1 epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Benincasa hispida]3.0e-0644.19Show/hide
Query:  WAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQW-WLFKGASDDIDNI
        W+PNPSK    SF   L S  +          L KVKI + + FF  Q LHG+VNT+  IQ +SSFLLG QW +L    S+++D+I
Subjt:  WAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQW-WLFKGASDDIDNI

TrEMBL top hitse value%identityAlignment
A0A438K2V4 Putative ribonuclease H protein4.7e-0538.46Show/hide
Query:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSF-LLGPQWW-LFKGASDDIDNI
        D   W+ + S  F   FFF  LS  S H  F     LW  K+P K+K     + HGKVNT D++Q    +  L PQW  L KG  + ID++
Subjt:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSF-LLGPQWW-LFKGASDDIDNI

A0A438K969 Putative ribonuclease H protein4.0e-0437.36Show/hide
Query:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSF-LLGPQWW-LFKGASDDIDNI
        D  VW+ + S  F    FF+ LS  S    F     LW  K+P K+K     + HGKVNT D++Q    +  L PQW  L KG  + ID++
Subjt:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSF-LLGPQWW-LFKGASDDIDNI

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.1e-0437.14Show/hide
Query:  LSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQK-YSSFLLGPQW-WLFKGASDDIDNI
        +S  + HP   L+  LWKV+ P+K KFF   ++HG +NT DR+QK   ++ L P W ++   + +DI+++
Subjt:  LSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQK-YSSFLLGPQW-WLFKGASDDIDNI

A0A6J1GM24 epimerase family protein SDR39U1 homolog, chloroplastic-like isoform X11.2e-0539.33Show/hide
Query:  LVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL
        + W+PNPSK      FF +LSS              KV + + ++FF  Q LHG+VNT+  I+K+ SFLL P W L    AS+++D+I+
Subjt:  LVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL

A0A6J1HZE6 epimerase family protein SDR39U1 homolog, chloroplastic-like2.0e-0842.86Show/hide
Query:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL
        + + W+PNPSK      FF +LSS              KV + +K++FF  Q LHG+VNT+  IQK+SSFLLGPQW      AS+++D+I+
Subjt:  DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKG-ASDDIDNIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTTTCTAGTCTGGGCTCCTAATCCCTCCAAGTGGTTTTTCAGTAGCTTTTTCTTCCATTTGTTGAGTTCTACTTCTCTTCACCCTTTTTTCCCGTTGTTTGCC
TTGCTTTGGAAGGTCAAAATTCCAGAAAAAATGAAGTTCTTTGGGATGCAGATCTTACATGGGAAAGTCAATACATTGGATCGTATCCAAAAGTATTCTTCTTTC
TTATTGGGGCCTCAGTGGTGGCTTTTCAAAGGTGCTTCGGATGATATTGACAATATTTTA
mRNA sequenceShow/hide mRNA sequence
GATTTTCTAGTCTGGGCTCCTAATCCCTCCAAGTGGTTTTTCAGTAGCTTTTTCTTCCATTTGTTGAGTTCTACTTCTCTTCACCCTTTTTTCCCGTTGTTTGCC
TTGCTTTGGAAGGTCAAAATTCCAGAAAAAATGAAGTTCTTTGGGATGCAGATCTTACATGGGAAAGTCAATACATTGGATCGTATCCAAAAGTATTCTTCTTTC
TTATTGGGGCCTCAGTGGTGGCTTTTCAAAGGTGCTTCGGATGATATTGACAATATTTTA
Protein sequenceShow/hide protein sequence
DFLVWAPNPSKWFFSSFFFHLLSSTSLHPFFPLFALLWKVKIPEKMKFFGMQILHGKVNTLDRIQKYSSFLLGPQWWLFKGASDDIDNIL