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MS005336 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005336
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEnzymatic polyprotein
Genome locationscaffold6:1803..2258
RNA-Seq ExpressionMS005336
SyntenyMS005336
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059217.1 Enzymatic polyprotein [Cucumis melo var. makuwa]1.4e-1135.57Show/hide
Query:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR
        +I ++++  SS   EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I + E +++ LL L+ S+E+   +K +Q  I  S+ DILNR
Subjt:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR

Query:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE
        +K E + P  ++DL  E+K LK+E+ E++ +L  LET  +  Q  Q ++
Subjt:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE

KAA0068171.1 Enzymatic polyprotein [Cucumis melo var. makuwa]6.2e-1237.68Show/hide
Query:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP
        E SF  EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I +   +++ LL L+ S+E+   +K +Q  I  S+ DILNR+K E + P
Subjt:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP

Query:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ
          ++DL  E+K+LK+E+ E++ +L  LET  +  Q+ Q
Subjt:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ

TYJ97599.1 Enzymatic polyprotein [Cucumis melo var. makuwa]1.4e-1135.57Show/hide
Query:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR
        +I ++++  SS   EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I + E +++ LL L+ S+E+   +K +Q  I  S+ DILNR
Subjt:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR

Query:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE
        +K E + P  ++DL  E+K LK+E+ E++ +L  LET  +  Q  Q ++
Subjt:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE

TYK21091.1 Enzymatic polyprotein [Cucumis melo var. makuwa]6.2e-1237.68Show/hide
Query:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP
        E SF  EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I +   +++ LL L+ S+E+   +K +Q  I  S+ DILNR+K E + P
Subjt:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP

Query:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ
          ++DL  E+K+LK+E+ E++ +L  LET  +  Q+ Q
Subjt:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ

TYK28079.1 hypothetical protein E5676_scaffold384G003430 [Cucumis melo var. makuwa]1.1e-1135.62Show/hide
Query:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR
        +I ++++  SS   EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I + E +++ LL L+ S+E+ + +K +Q  I  S+ DILNR
Subjt:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR

Query:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ
        +K E + P  ++DL  E+K+LK+E+ E++ +L  LE   +  Q+ Q
Subjt:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ

TrEMBL top hitse value%identityAlignment
A0A5A7UX67 Enzymatic polyprotein6.7e-1235.57Show/hide
Query:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR
        +I ++++  SS   EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I + E +++ LL L+ S+E+   +K +Q  I  S+ DILNR
Subjt:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR

Query:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE
        +K E + P  ++DL  E+K LK+E+ E++ +L  LET  +  Q  Q ++
Subjt:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE

A0A5A7VRE0 Reverse transcriptase3.0e-1237.68Show/hide
Query:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP
        E SF  EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I +   +++ LL L+ S+E+   +K +Q  I  S+ DILNR+K E + P
Subjt:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP

Query:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ
          ++DL  E+K+LK+E+ E++ +L  LET  +  Q+ Q
Subjt:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ

A0A5D3BEY3 Enzymatic polyprotein6.7e-1235.57Show/hide
Query:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR
        +I ++++  SS   EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I + E +++ LL L+ S+E+   +K +Q  I  S+ DILNR
Subjt:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR

Query:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE
        +K E + P  ++DL  E+K LK+E+ E++ +L  LET  +  Q  Q ++
Subjt:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQTAE

A0A5D3DBS1 Reverse transcriptase3.0e-1237.68Show/hide
Query:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP
        E SF  EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I +   +++ LL L+ S+E+   +K +Q  I  S+ DILNR+K E + P
Subjt:  EDSFSSEFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNRIKQEVQKP

Query:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ
          ++DL  E+K+LK+E+ E++ +L  LET  +  Q+ Q
Subjt:  ATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ

A0A5D3DXC4 CCHC-type domain-containing protein5.2e-1235.62Show/hide
Query:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR
        +I ++++  SS   EF S S  S+D+G   C   C       IN++T +Q+TL+DL ++I + E +++ LL L+ S+E+ + +K +Q  I  S+ DILNR
Subjt:  FIRVIEDSFSS---EFKSSSFESEDDGPKSCKVAC---YFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQ--ITTSFADILNR

Query:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ
        +K E + P  ++DL  E+K+LK+E+ E++ +L  LE   +  Q+ Q
Subjt:  IKQEVQKPATIQDLQGEIKLLKQELREDRSKLQLLETVVELLQQEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTATTCGTGTAATCGAAGACTCCTTTTCCTCAGAATTTAAGAGTTCCTCTTTTGAGTCCGAAGATGATGGTCCAAAGTCGTGCAAAGTTGCGTGCTACTTCAATACGAT
AAATATGCTCACAAGTGAGCAACAAACTCTTTATGACTTGACTCAAAAGATAAACGAGCTAGAGCTACAAAAGAGCATACTGCTAACACTTCGTGCTAGCATAGAGAAAA
ATCTTCAAAAGAAAGAAGTGCAGATAACAACTTCTTTTGCTGATATTCTAAACCGCATAAAACAAGAAGTTCAGAAGCCAGCAACGATTCAAGACTTGCAAGGAGAAATA
AAACTCCTCAAGCAAGAATTACGGGAAGACCGTTCAAAACTTCAGCTCCTAGAGACTGTAGTAGAATTACTACAGCAAGAGCAAACGGCCGAGTCGATGGTGATGACCTC
TATTCAAGACGATGTT
mRNA sequenceShow/hide mRNA sequence
TTTATTCGTGTAATCGAAGACTCCTTTTCCTCAGAATTTAAGAGTTCCTCTTTTGAGTCCGAAGATGATGGTCCAAAGTCGTGCAAAGTTGCGTGCTACTTCAATACGAT
AAATATGCTCACAAGTGAGCAACAAACTCTTTATGACTTGACTCAAAAGATAAACGAGCTAGAGCTACAAAAGAGCATACTGCTAACACTTCGTGCTAGCATAGAGAAAA
ATCTTCAAAAGAAAGAAGTGCAGATAACAACTTCTTTTGCTGATATTCTAAACCGCATAAAACAAGAAGTTCAGAAGCCAGCAACGATTCAAGACTTGCAAGGAGAAATA
AAACTCCTCAAGCAAGAATTACGGGAAGACCGTTCAAAACTTCAGCTCCTAGAGACTGTAGTAGAATTACTACAGCAAGAGCAAACGGCCGAGTCGATGGTGATGACCTC
TATTCAAGACGATGTT
Protein sequenceShow/hide protein sequence
FIRVIEDSFSSEFKSSSFESEDDGPKSCKVACYFNTINMLTSEQQTLYDLTQKINELELQKSILLTLRASIEKNLQKKEVQITTSFADILNRIKQEVQKPATIQDLQGEI
KLLKQELREDRSKLQLLETVVELLQQEQTAESMVMTSIQDDV