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MS005337 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005337
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 8 isoform X2
Genome locationscaffold6:18724..18938
RNA-Seq ExpressionMS005337
SyntenyMS005337
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032570.1 protein SAND [Cucumis melo var. makuwa]2.0e-0542.25Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        ++KS  D  LG+ +    N+ALLA+WRW F +E    W K+V S+H SD F W T  K       PW +IS
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]1.4e-0640.85Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        +S   +D GLG+      N ALLA+W W +   E   WR+++ S+HG + FDWFT  KS      PW NI+
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

KAA0068192.1 mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo var. makuwa]2.0e-0542.86Show/hide
Query:  GLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        GLG+     +N  LLA+W W +   +  +WRKI+  +HG + FDWFT  KS      PW NIS
Subjt:  GLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

TYJ97221.1 putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa]8.2e-0745.83Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNISE
        +S SL+  GLG+      N ALLA+W W F  E F + RKI+ S+HG +PFDWFT  K       PW +IS+
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNISE

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]2.0e-0539.44Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        +S   +D GLG+      N ALLA+W W +   E   WR+++ S+HG + FDWFT  KS       W NI+
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

TrEMBL top hitse value%identityAlignment
A0A5A7SP09 Vacuolar fusion protein MON1 homolog9.8e-0642.25Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        ++KS  D  LG+ +    N+ALLA+WRW F +E    W K+V S+H SD F W T  K       PW +IS
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

A0A5A7T2Y0 zf-RVT domain-containing protein6.8e-0740.85Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        +S   +D GLG+      N ALLA+W W +   E   WR+++ S+HG + FDWFT  KS      PW NI+
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

A0A5D3BF26 Putative LRR receptor-like serine/threonine-protein kinase4.0e-0745.83Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNISE
        +S SL+  GLG+      N ALLA+W W F  E F + RKI+ S+HG +PFDWFT  K       PW +IS+
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFGNE-FFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNISE

A0A5D3DC06 Mediator of RNA polymerase II transcription subunit 8 isoform X29.8e-0642.86Show/hide
Query:  GLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        GLG+     +N  LLA+W W +   +  +WRKI+  +HG + FDWFT  KS      PW NIS
Subjt:  GLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

A0A5D3DE60 zf-RVT domain-containing protein9.8e-0639.44Show/hide
Query:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS
        +S   +D GLG+      N ALLA+W W +   E   WR+++ S+HG + FDWFT  KS       W NI+
Subjt:  ISKSLEDSGLGICRHSQINLALLARWRWWFG-NEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTCTAAATCTTTAGAAGATAGTGGATTAGGCATATGCAGGCATTCCCAAATAAATTTAGCGTTACTTGCAAGATGGAGGTGGTGGTTTGGTAACGAATTCTTCTATTG
GAGGAAGATAGTGGAAAGCTTGCATGGTTCAGATCCGTTTGATTGGTTCACAGACTCAAAGTCCATTGGTTGCAAATGTTGCCCTTGGAGCAATATATCTGAG
mRNA sequenceShow/hide mRNA sequence
ATTTCTAAATCTTTAGAAGATAGTGGATTAGGCATATGCAGGCATTCCCAAATAAATTTAGCGTTACTTGCAAGATGGAGGTGGTGGTTTGGTAACGAATTCTTCTATTG
GAGGAAGATAGTGGAAAGCTTGCATGGTTCAGATCCGTTTGATTGGTTCACAGACTCAAAGTCCATTGGTTGCAAATGTTGCCCTTGGAGCAATATATCTGAG
Protein sequenceShow/hide protein sequence
ISKSLEDSGLGICRHSQINLALLARWRWWFGNEFFYWRKIVESLHGSDPFDWFTDSKSIGCKCCPWSNISE