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MS005338 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005338
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein 3, mitochondrial-like
Genome locationscaffold6:22098..22340
RNA-Seq ExpressionMS005338
SyntenyMS005338
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2617689.1 unnamed protein product [Spirodela intermedia]3.6e-0643Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWVRGGGYGGGG--NVSYEGGGYG
        MSS K F+ GLSYGT+DQS+REAF+                   +GFGF+T  + +EA +AI        WLW      RGGGY GGG       GGGYG
Subjt:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWVRGGGYGGGG--NVSYEGGGYG
KAG6572904.1 Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.1e-0644.95Show/hide
Query:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------WLWSREWWVRGGGYGGGGN
        FMSS K FV GLSYGT+D S+REAF                    +GFGFVT   NEEA SAIQA     L             SR  +V GGGY GGG 
Subjt:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------WLWSREWWVRGGGYGGGGN

Query:  VSYEGGGYG
            GGG G
Subjt:  VSYEGGGYG
XP_010258047.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Nelumbo nucifera]2.7e-0646.3Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL--------WLWSREWWVR--GGGYGGGGNV
        MSS K F+ GLSYGT+DQS+REAF                    +GFGFVT  + EEA SAIQA     L        +   R    R  GGGYGGGG  
Subjt:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL--------WLWSREWWVR--GGGYGGGGNV

Query:  SYEGGGYG
        SY GGGYG
Subjt:  SYEGGGYG
XP_022137596.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]4.2e-0744.83Show/hide
Query:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------------WLWSREWWVRGGG
        FMSS K FV GLSYGT+DQS+REAF                    +GFGFVT  ANEEA SAIQA     L                          GGG
Subjt:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------------WLWSREWWVRGGG

Query:  YGGGGNVSY-EGGGYG
        YGGGGN  Y  GGGYG
Subjt:  YGGGGNVSY-EGGGYG
XP_022954706.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]6.1e-0644.95Show/hide
Query:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------WLWSREWWVRGGGYGGGGN
        FMSS K FV GLSYGT+D S+REAF                    +GFGFVT   NEEA SAIQA     L             SR  +V GGGY GGG 
Subjt:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------WLWSREWWVRGGGYGGGGN

Query:  VSYEGGGYG
            GGG G
Subjt:  VSYEGGGYG
TrEMBL top hitse value%identityAlignment
A0A1U7ZUI6 glycine-rich RNA-binding protein 3, mitochondrial-like1.3e-0646.3Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL--------WLWSREWWVR--GGGYGGGGNV
        MSS K F+ GLSYGT+DQS+REAF                    +GFGFVT  + EEA SAIQA     L        +   R    R  GGGYGGGG  
Subjt:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL--------WLWSREWWVR--GGGYGGGGNV

Query:  SYEGGGYG
        SY GGGYG
Subjt:  SYEGGGYG
A0A6J1C734 glycine-rich RNA-binding protein 4, mitochondrial-like2.0e-0744.83Show/hide
Query:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------------WLWSREWWVRGGG
        FMSS K FV GLSYGT+DQS+REAF                    +GFGFVT  ANEEA SAIQA     L                          GGG
Subjt:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------------WLWSREWWVRGGG

Query:  YGGGGNVSY-EGGGYG
        YGGGGN  Y  GGGYG
Subjt:  YGGGGNVSY-EGGGYG
A0A6J1GRM7 glycine-rich RNA-binding protein 4, mitochondrial-like2.9e-0644.95Show/hide
Query:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------WLWSREWWVRGGGYGGGGN
        FMSS K FV GLSYGT+D S+REAF                    +GFGFVT   NEEA SAIQA     L             SR  +V GGGY GGG 
Subjt:  FMSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFTKVLL----------WLWSREWWVRGGGYGGGGN

Query:  VSYEGGGYG
            GGG G
Subjt:  VSYEGGGYG
A0A6J1I6W1 glycine-rich RNA-binding protein 3, mitochondrial3.8e-0644.95Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLL--------WLWSREWWVRGGGYGGGG----
        MSS K FV GLSYGT+DQS+REAF+                   +GFGFVT  ANEEA SAIQA     L        +   R    RGGGY GG     
Subjt:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLL--------WLWSREWWVRGGGYGGGG----

Query:  -NVSYEGGG
         + SY+GGG
Subjt:  -NVSYEGGG
A0A7I8IHN5 Hypothetical protein1.7e-0643Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWVRGGGYGGGG--NVSYEGGGYG
        MSS K F+ GLSYGT+DQS+REAF+                   +GFGF+T  + +EA +AI        WLW      RGGGY GGG       GGGYG
Subjt:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWVRGGGYGGGG--NVSYEGGGYG
SwissProt top hitse value%identityAlignment
Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial2.6e-0436.54Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFT------KVLLWLWSREWWVRGGGYGGGGNVSYEG
        MSS K F+ G++Y  ++ S+REAF                    +GFGFVT  ++E A SAIQA        +V+   ++ +    GGG+GGGG     G
Subjt:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFT------KVLLWLWSREWWVRGGGYGGGGNVSYEG

Query:  GGYG
        GGYG
Subjt:  GGYG
Arabidopsis top hitse value%identityAlignment
AT1G74230.1 glycine-rich RNA-binding protein 57.9e-0437Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWV--RGGGYGGGGNVSYEGGGYG
        MSS K FV G+SY T++  +REAF+                   +GF FVT  + EEA +A+Q   + L     R  +   RG G+GG G     GGGYG
Subjt:  MSSLKFFVEGLSYGTNDQSMREAFN------------------GKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWV--RGGGYGGGGNVSYEGGGYG
AT5G61030.1 glycine-rich RNA-binding protein 31.9e-0536.54Show/hide
Query:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFT------KVLLWLWSREWWVRGGGYGGGGNVSYEG
        MSS K F+ G++Y  ++ S+REAF                    +GFGFVT  ++E A SAIQA        +V+   ++ +    GGG+GGGG     G
Subjt:  MSSLKFFVEGLSYGTNDQSMREAF------------------NGKGFGFVTLYANEEAFSAIQAFT------KVLLWLWSREWWVRGGGYGGGGNVSYEG

Query:  GGYG
        GGYG
Subjt:  GGYG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCATGTCGAGTTTGAAATTTTTTGTTGAAGGCCTCTCATATGGTACTAATGACCAGAGTATGAGGGAAGCGTTTAATGGCAAAGGTTTTGGGTTTGTTACTCTCTATGC
CAATGAAGAAGCGTTCAGTGCTATCCAAGCGTTTACAAAGGTCTTGTTGTGGCTTTGGAGTAGAGAGTGGTGGGTACGGGGTGGAGGTTATGGTGGTGGTGGCAATGTTA
GCTATGAGGGTGGAGGTTATGGT
mRNA sequenceShow/hide mRNA sequence
TTCATGTCGAGTTTGAAATTTTTTGTTGAAGGCCTCTCATATGGTACTAATGACCAGAGTATGAGGGAAGCGTTTAATGGCAAAGGTTTTGGGTTTGTTACTCTCTATGC
CAATGAAGAAGCGTTCAGTGCTATCCAAGCGTTTACAAAGGTCTTGTTGTGGCTTTGGAGTAGAGAGTGGTGGGTACGGGGTGGAGGTTATGGTGGTGGTGGCAATGTTA
GCTATGAGGGTGGAGGTTATGGT
Protein sequenceShow/hide protein sequence
FMSSLKFFVEGLSYGTNDQSMREAFNGKGFGFVTLYANEEAFSAIQAFTKVLLWLWSREWWVRGGGYGGGGNVSYEGGGYG