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MS005344 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005344
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold6:105348..105545
RNA-Seq ExpressionMS005344
SyntenyMS005344
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

TYK19563.1 uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]2.5e-0544.83Show/hide
Query:  LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQI
        LW   V +I+W IW ERN  VF  K+ ++     LV+   S WTS+SK FCNY +  I
Subjt:  LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQI

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]3.2e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

TrEMBL top hitse value%identityAlignment
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein1.6e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.6e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

A0A5D3D7T2 Uncharacterized protein1.2e-0544.83Show/hide
Query:  LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQI
        LW   V +I+W IW ERN  VF  K+ ++     LV+   S WTS+SK FCNY +  I
Subjt:  LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQI

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein1.6e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.6e-0543.55Show/hide
Query:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF
        N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N   F
Subjt:  NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTATGGTCAAATTCGGTGGCGAGTATCCTTTGGAGAATATGGCACGAGAGGAATCAATGGGTTTTTCATGACAAAGAGACGAACGTGCATGCTTTTTGGGATCTTGTCAA
AACTTTCGCCTCTTCGTGGACCTCGTTATCTAAATTTTTTTGTAACTATGGTGTGACACAAATCTTTGCCAATTGGGAGGTTTTTCTG
mRNA sequenceShow/hide mRNA sequence
TTATGGTCAAATTCGGTGGCGAGTATCCTTTGGAGAATATGGCACGAGAGGAATCAATGGGTTTTTCATGACAAAGAGACGAACGTGCATGCTTTTTGGGATCTTGTCAA
AACTTTCGCCTCTTCGTGGACCTCGTTATCTAAATTTTTTTGTAACTATGGTGTGACACAAATCTTTGCCAATTGGGAGGTTTTTCTG
Protein sequenceShow/hide protein sequence
LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVFL