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MS005345 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005345
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold6:107880..108086
RNA-Seq ExpressionMS005345
SyntenyMS005345
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]1.3e-1246.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        Y++IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+ C+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
VVA22845.1 Hypothetical predicted protein, partial [Prunus dulcis]2.2e-1246.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
VVA29318.1 Hypothetical predicted protein, partial [Prunus dulcis]2.2e-1246.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]2.2e-1246.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
XP_034223760.1 THO complex subunit 1 isoform X1 [Prunus dulcis]4.8e-1247.76Show/hide
Query:  AIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  AIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
TrEMBL top hitse value%identityAlignment
A0A5H2XQW2 TatD related DNase6.2e-1346.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        Y++IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+ C+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
M5WKV4 Reverse transcriptase domain-containing protein (Fragment)8.0e-1346.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
M5WPQ5 Reverse transcriptase domain-containing protein8.0e-1346.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
M5X4S0 Reverse transcriptase domain-containing protein (Fragment)8.0e-1346.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
M5XV38 zf-RVT domain-containing protein8.0e-1346.38Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        + +IWK K+  K+ FFVW+  NGR+NT + +QR+    CL PS C+LC+E+ EN+ H+F  C Y+L  W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.9e-0734.29Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNT-DEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
        YKA+W    + K  F  W++   RL+T D +    LS+    P++C+LC    E+  H+FF CP+    W
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNT-DEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.5e-0636.92Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYA
        YK +W + +  K     WI I  RL T +   R LS      S C+LC   +E   H+FF CPY+
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYA
AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.7e-0539.39Show/hide
Query:  YKAIWKTKSLKKVGFFVWIIINGRLNT-DEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYA
        +KAIW    + K  F  W+ I  RL T D++L   L V    PS+C+LC    E   H+FF C +A
Subjt:  YKAIWKTKSLKKVGFFVWIIINGRLNT-DEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATAAGGCTATTTGGAAAACAAAGAGCCTGAAGAAAGTTGGGTTTTTTGTTTGGATCATCATTAATGGAAGATTGAATACAGATGAAGTTCTTCAAAGAAAGCTCTCGGT
CTTTTGTCTACAGCCATCAATATGTATGTTATGTCAAGAAAGCATGGAGAATCTGATCCATATTTTCTTCCGATGTCCTTACGCATTGCACTGTTGG
mRNA sequenceShow/hide mRNA sequence
TATAAGGCTATTTGGAAAACAAAGAGCCTGAAGAAAGTTGGGTTTTTTGTTTGGATCATCATTAATGGAAGATTGAATACAGATGAAGTTCTTCAAAGAAAGCTCTCGGT
CTTTTGTCTACAGCCATCAATATGTATGTTATGTCAAGAAAGCATGGAGAATCTGATCCATATTTTCTTCCGATGTCCTTACGCATTGCACTGTTGG
Protein sequenceShow/hide protein sequence
YKAIWKTKSLKKVGFFVWIIINGRLNTDEVLQRKLSVFCLQPSICMLCQESMENLIHIFFRCPYALHCW