CuGenDBv2

Gene ID	MS005348
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein STABILIZED1
Genome location	scaffold6:142149..143057
RNA-Seq Expression	MS005348
Synteny	MS005348
Gene Ontology terms	GO:0000244 - spliceosomal tri-snRNP complex assembly (biological process) GO:0080188 - RNA-directed DNA methylation (biological process) GO:2000630 - positive regulation of miRNA metabolic process (biological process) GO:2000636 - positive regulation of primary miRNA processing (biological process) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR010491 - PRP1 splicing factor, N-terminal IPR027108 - Pre-mRNA-processing factor 6/Prp1/STA1 IPR029071 - Ubiquitin-like domain superfamily IPR045075 - Pre-mRNA-splicing factor Syf1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140515.1 protein STABILIZED1 [Cucumis sativus]

2.3e-135

86.56

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLNLNP+TTS+LNLKRAI++VS+IP+S QRLFLSQSF LS F+DSTLLS  R+ PNST TLHVPL+GGMQAPTIPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAP  R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

XP_022140441.1 protein STABILIZED1 [Momordica charantia]

3.5e-139

89.51

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLNLNPATTSL NLK+AI+EVS IPVSLQRLFLSQSFILSDFDDSTLLS  RVQPNST TLHVPLYGGMQAPTIPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYT+S QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

XP_022947634.1 protein STABILIZED1 [Cucurbita moschata]

1.6e-136

87.54

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Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLN+NP+TTS+LNLKRAI+EVS+IPVSLQRLFLSQSF +SD +DSTLLS  RV PNST TLHVPLYGGMQAP IPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

XP_022970703.1 protein STABILIZED1 [Cucurbita maxima]

1.4e-135

87.21

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Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLN+NP+TTS+LNLK AI+EVS+IPVSLQRLFLSQSF +SD +DSTLLS  RV PNST TLHVPLYGGMQAP IPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

XP_023532967.1 protein STABILIZED1 [Cucurbita pepo subsp. pepo]

4.7e-136

87.21

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Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLN+NP++TS+LNLKRAI+EVS+IPVSLQRLFLSQSF +SD +DSTLLS  RV PNST TLHVPLYGGMQAP IPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDS6 Uncharacterized protein

1.1e-135

86.56

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLNLNP+TTS+LNLKRAI++VS+IP+S QRLFLSQSF LS F+DSTLLS  R+ PNST TLHVPL+GGMQAPTIPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAP  R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

A0A5A7TA27 Protein STABILIZED1

1.5e-135

86.56

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLNLNP+TTS+ NLKRAI+EVS+IP+S QRLFLSQSF LS F+DSTLLS  R+ PNST TLHVPL+GGMQAPTIPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAP  R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

A0A6J1CG40 protein STABILIZED1

1.7e-139

89.51

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLNLNPATTSL NLK+AI+EVS IPVSLQRLFLSQSFILSDFDDSTLLS  RVQPNST TLHVPLYGGMQAPTIPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYT+S QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

A0A6J1G7D8 protein STABILIZED1

7.8e-137

87.54

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLN+NP+TTS+LNLKRAI+EVS+IPVSLQRLFLSQSF +SD +DSTLLS  RV PNST TLHVPLYGGMQAP IPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

A0A6J1I4P8 protein STABILIZED1

6.6e-136

87.21

Show/hide

Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP
        MVFL IPNQKTLFLN+NP+TTS+LNLK AI+EVS+IPVSLQRLFLSQSF +SD +DSTLLS  RV PNST TLHVPLYGGMQAP IPKP+ DFLNSK PP
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLS--RVQPNST-TLHVPLYGGMQAPTIPKPQSDFLNSK-PP

Query:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV
        NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+TTIGG  AAPA R R KGGEEEEEDE EDKGYDENQKFDEFEGN VGLFASAEYDEDDKEA+ VWE 
Subjt:  NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEV

Query:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG
        IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFA+LKRKLYTLS QEWESIP+IG YSLRNKKKRFE FVPV DTLLEKARQEQEHVTALDPKSRA+G
Subjt:  IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASG

Query:  GMETP
        G ETP
Subjt:  GMETP

SwissProt top hits

e value

%identity

Alignment

O94906 Pre-mRNA-processing factor 6

4.0e-37

45.05

Show/hide

Query:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE
        K +  FL    P  YV GLGRGATGFTTRSDIGPAR A D  D      G         +R  G + ++    +D   D N   +DEF G    LF+S  
Subjt:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE

Query:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR
        Y++DD+EA+ ++  +DKRMD RRK+RRE R KEEIEKYR   PKI +QF++LKRKL  ++ +EW SIP++G    RNK++   R+E   PV D+   K  
Subjt:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR

Query:  QEQEHVTALDPKSRASGGMETP
        Q  E+ T++DP+    GG+ TP
Subjt:  QEQEHVTALDPKSRASGGMETP

Q2KJJ0 Pre-mRNA-processing factor 6

4.0e-37

45.05

Show/hide

Query:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE
        K +  FL    P  YV GLGRGATGFTTRSDIGPAR A D  D      G         +R  G + ++    +D   D N   +DEF G    LF+S  
Subjt:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE

Query:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR
        Y++DD+EA+ ++  +DKRMD RRK+RRE R KEEIEKYR   PKI +QF++LKRKL  ++ +EW SIP++G    RNK++   R+E   PV D+   K  
Subjt:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR

Query:  QEQEHVTALDPKSRASGGMETP
        Q  E+ T++DP+    GG+ TP
Subjt:  QEQEHVTALDPKSRASGGMETP

Q5RCC2 Pre-mRNA-processing factor 6

4.0e-37

45.05

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Query:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE
        K +  FL    P  YV GLGRGATGFTTRSDIGPAR A D  D      G         +R  G + ++    +D   D N   +DEF G    LF+S  
Subjt:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE

Query:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR
        Y++DD+EA+ ++  +DKRMD RRK+RRE R KEEIEKYR   PKI +QF++LKRKL  ++ +EW SIP++G    RNK++   R+E   PV D+   K  
Subjt:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR

Query:  QEQEHVTALDPKSRASGGMETP
        Q  E+ T++DP+    GG+ TP
Subjt:  QEQEHVTALDPKSRASGGMETP

Q91YR7 Pre-mRNA-processing factor 6

4.0e-37

45.05

Show/hide

Query:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE
        K +  FL    P  YV GLGRGATGFTTRSDIGPAR A D  D      G         +R  G + ++    +D   D N   +DEF G    LF+S  
Subjt:  KPQSDFLNSKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQ-KFDEFEGNGVGLFASAE

Query:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR
        Y++DD+EA+ ++  +DKRMD RRK+RRE R KEEIEKYR   PKI +QF++LKRKL  ++ +EW SIP++G    RNK++   R+E   PV D+   K  
Subjt:  YDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKK---RFEIFVPVSDTLLEKAR

Query:  QEQEHVTALDPKSRASGGMETP
        Q  E+ T++DP+    GG+ TP
Subjt:  QEQEHVTALDPKSRASGGMETP

Q9ZT71 Protein STABILIZED1

2.3e-93

62.9

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Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFL-----SQSFILSDFDDSTLLSRV---QPNSTTLHVPLYGGMQAPTIPKPQSDFLN
        MVFL IPN KTL +++NP +T++   ++   + S++P S  R  L     S+ F+ S   DS LLS +   + ++  +HV L GGMQA   PKP+ DFLN
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFL-----SQSFILSDFDDSTLLSRV---QPNSTTLHVPLYGGMQAPTIPKPQSDFLN

Query:  SKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEAN
        SKPP NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+              +    E E+++E E+K YDENQ FDEFEGN VGLFA+AEYDEDDKEA+
Subjt:  SKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEAN

Query:  VVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPK
         +WE ID+RMDSRRKDRREA+LKEEIEKYRASNPKITEQFA+LKRKL+TLS  EW+SIP+IG YSLRNKKK+FE FVP+ DTLLEKA++E+E V ALDPK
Subjt:  VVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPK

Query:  SRASGGMETP
        SRA+GG ETP
Subjt:  SRASGGMETP

Arabidopsis top hits

e value

%identity

Alignment

AT4G03430.1 pre-mRNA splicing factor-related

1.6e-94

62.9

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Query:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFL-----SQSFILSDFDDSTLLSRV---QPNSTTLHVPLYGGMQAPTIPKPQSDFLN
        MVFL IPN KTL +++NP +T++   ++   + S++P S  R  L     S+ F+ S   DS LLS +   + ++  +HV L GGMQA   PKP+ DFLN
Subjt:  MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFL-----SQSFILSDFDDSTLLSRV---QPNSTTLHVPLYGGMQAPTIPKPQSDFLN

Query:  SKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEAN
        SKPP NYVAGLGRGATGFTTRSDIGPARAAPDLPD S+              +    E E+++E E+K YDENQ FDEFEGN VGLFA+AEYDEDDKEA+
Subjt:  SKPP-NYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEAN

Query:  VVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPK
         +WE ID+RMDSRRKDRREA+LKEEIEKYRASNPKITEQFA+LKRKL+TLS  EW+SIP+IG YSLRNKKK+FE FVP+ DTLLEKA++E+E V ALDPK
Subjt:  VVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPK

Query:  SRASGGMETP
        SRA+GG ETP
Subjt:  SRASGGMETP

AT4G38590.1 beta-galactosidase 14

1.4e-42

51.94

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Query:  DSTLLSRV--QPNST-TLHVPLYGGMQAPTIPKPQSDFLNSKPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEE
        DS L+S +   P ST  ++VPL GG  AP    PQ  F    P NYVAGLGRGA GFTTRSDIGPARA                                
Subjt:  DSTLLSRV--QPNST-TLHVPLYGGMQAPTIPKPQSDFLNSKPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEE

Query:  EDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKI
             D   D N KFD+FEG+  GLFA+AE D+ DKEA+ +W+ ID+RMDSRRKDRREA+LK+EIE YRASNPK++ QF +L RKL+TLS  EW+SIP+I
Subjt:  EDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKI

Query:  GHYSLR
        G+YS R
Subjt:  GHYSLR

AT4G38590.2 beta-galactosidase 14

1.4e-42

51.94

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Query:  DSTLLSRV--QPNST-TLHVPLYGGMQAPTIPKPQSDFLNSKPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEE
        DS L+S +   P ST  ++VPL GG  AP    PQ  F    P NYVAGLGRGA GFTTRSDIGPARA                                
Subjt:  DSTLLSRV--QPNST-TLHVPLYGGMQAPTIPKPQSDFLNSKPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEE

Query:  EDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKI
             D   D N KFD+FEG+  GLFA+AE D+ DKEA+ +W+ ID+RMDSRRKDRREA+LK+EIE YRASNPK++ QF +L RKL+TLS  EW+SIP+I
Subjt:  EDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTLSPQEWESIPKI

Query:  GHYSLR
        G+YS R
Subjt:  GHYSLR

Sequences

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CDS sequence

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ATGGTGTTCCTTATGATCCCCAACCAAAAAACCTTATTCCTTAACCTAAACCCCGCCACTACTTCCCTTCTTAACTTGAAGCGGGCAATAAAGGAGGTTTCCAACATACC
CGTTTCTCTTCAGCGCTTGTTCTTATCCCAAAGCTTCATATTATCAGATTTCGATGATTCCACGTTGCTCTCCCGAGTCCAACCCAATTCAACTACCCTTCACGTTCCCT
TATATGGAGGTATGCAAGCTCCGACTATCCCAAAACCTCAATCGGATTTCCTGAATTCCAAACCTCCTAATTATGTTGCTGGGTTGGGACGTGGTGCGACTGGATTTACG
ACTAGGTCTGATATTGGTCCGGCTCGAGCTGCTCCAGACCTTCCTGATATGTCTTCGACAACTATTGGAGGAGTCTTCGCCGCTCCAGCCAATAGAAGGCGTGAGAAAGG
TGGGGAGGAAGAGGAAGAAGATGAAAGAGAGGACAAAGGATATGATGAGAATCAGAAGTTTGATGAATTCGAAGGCAACGGTGTAGGGTTATTCGCATCGGCTGAATACG
ATGAGGACGATAAGGAGGCTAATGTCGTATGGGAGGTAATCGATAAGCGGATGGATTCGAGAAGAAAGGATAGGAGAGAGGCAAGATTAAAGGAAGAGATTGAGAAGTAC
CGTGCTTCGAACCCTAAAATCACAGAGCAATTTGCGAACCTAAAGCGGAAGTTATATACTCTGTCGCCGCAAGAGTGGGAAAGCATTCCGAAAATTGGGCATTATTCATT
GAGGAACAAGAAGAAGAGGTTTGAGATCTTTGTACCTGTGTCGGATACCTTGCTTGAGAAGGCTAGGCAGGAGCAAGAGCATGTGACGGCGTTGGATCCGAAGAGTAGGG
CATCTGGCGGGATGGAGACACCA

mRNA sequence

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Protein sequence

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MVFLMIPNQKTLFLNLNPATTSLLNLKRAIKEVSNIPVSLQRLFLSQSFILSDFDDSTLLSRVQPNSTTLHVPLYGGMQAPTIPKPQSDFLNSKPPNYVAGLGRGATGFT
TRSDIGPARAAPDLPDMSSTTIGGVFAAPANRRREKGGEEEEEDEREDKGYDENQKFDEFEGNGVGLFASAEYDEDDKEANVVWEVIDKRMDSRRKDRREARLKEEIEKY
RASNPKITEQFANLKRKLYTLSPQEWESIPKIGHYSLRNKKKRFEIFVPVSDTLLEKARQEQEHVTALDPKSRASGGMETP

MS005348 (gene) of Bitter gourd (TR) v1 genome