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MS005355 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005355
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA primase
Genome locationscaffold6:258821..258949
RNA-Seq ExpressionMS005355
SyntenyMS005355
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0005658 - alpha DNA polymerase:primase complex (cellular component)
GO:0003896 - DNA primase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]1.9e-0669.77Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        M+T AVENG  DM IDG EQKP K V DGFD NYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
XP_008465512.1 PREDICTED: DNA primase small subunit-like [Cucumis melo]1.9e-0669.77Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        M+T AVENG  DM IDG EQKP K V DGFD NYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
XP_022141779.1 DNA primase small subunit-like [Momordica charantia]9.7e-1186.05Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        MITEAVENG GDMEIDGFEQKP KVV DGFDVNYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
XP_022141835.1 DNA primase small subunit-like [Momordica charantia]9.7e-1186.05Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        MITEAVENG GDMEIDGFEQKP KVV DGFDVNYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
XP_038889665.1 DNA primase small subunit [Benincasa hispida]8.5e-0767.44Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        M+T A+ENGE DM IDG EQKP   V DGFD NYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase2.0e-0667.44Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        M+T AVENG  DM IDG EQKP   V DGFD NYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
A0A1S3CQI3 DNA primase small subunit-like9.1e-0769.77Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        M+T AVENG  DM IDG EQKP K V DGFD NYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
A0A5A7T8Y3 DNA primase9.1e-0769.77Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        M+T AVENG  DM IDG EQKP K V DGFD NYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
A0A6J1CJS7 DNA primase small subunit-like4.7e-1186.05Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        MITEAVENG GDMEIDGFEQKP KVV DGFDVNYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
A0A6J1CKZ3 DNA primase4.7e-1186.05Show/hide
Query:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
        MITEAVENG GDMEIDGFEQKP KVV DGFDVNYLKIYY + F
Subjt:  MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACCGAAGCGGTTGAGAATGGAGAAGGCGATATGGAAATTGATGGATTCGAACAAAAGCCTGGGAAAGTTGTGTTCGATGGGTTCGATGTTAACTATCTCAAGAT
TTACTACAGTGAAGGATTT
mRNA sequenceShow/hide mRNA sequence
ATGATTACCGAAGCGGTTGAGAATGGAGAAGGCGATATGGAAATTGATGGATTCGAACAAAAGCCTGGGAAAGTTGTGTTCGATGGGTTCGATGTTAACTATCTCAAGAT
TTACTACAGTGAAGGATTT
Protein sequenceShow/hide protein sequence
MITEAVENGEGDMEIDGFEQKPGKVVFDGFDVNYLKIYYSEGF