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MS005364 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005364
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCellulose synthase family protein
Genome locationscaffold6:351077..351278
RNA-Seq ExpressionMS005364
SyntenyMS005364
Gene Ontology termsGO:0009833 - plant-type primary cell wall biogenesis (biological process)
GO:0009834 - plant-type secondary cell wall biogenesis (biological process)
GO:0030244 - cellulose biosynthetic process (biological process)
GO:0071555 - cell wall organization (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016760 - cellulose synthase (UDP-forming) activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005150 - Cellulose synthase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKA52108.1 Cellulose synthase A catalytic subunit 7 [UDP-forming] [Apostasia shenzhenica]8.7e-2785.07Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHY+NN+K +REAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRN+VFFDVS
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

XP_008459950.1 PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] [Cucumis melo]1.1e-2686.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

XP_021722190.1 cellulose synthase A catalytic subunit 4 [UDP-forming]-like [Chenopodium quinoa]1.1e-2686.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

XP_021848613.1 cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X2 [Spinacia oleracea]1.1e-2686.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

XP_022157526.1 cellulose synthase A catalytic subunit 4 [UDP-forming] [Momordica charantia]1.1e-2686.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

TrEMBL top hitse value%identityAlignment
A0A0A0K9D3 Cellulose synthase5.5e-2786.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

A0A0K9QTK3 Cellulose synthase5.5e-2786.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

A0A0K9QVP1 Cellulose synthase5.5e-2786.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

A0A2I0A9B0 Cellulose synthase4.2e-2785.07Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHY+NN+K +REAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRN+VFFDVS
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

A0A5D3DLU4 Cellulose synthase5.5e-2786.57Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MDPQ GKKLCYVQFP+RFDGIDRHDR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

SwissProt top hitse value%identityAlignment
O48947 Cellulose synthase A catalytic subunit 2 [UDP-forming]1.4e-2774.63Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        L+NAP++LN+DCDHY+NN+K +RE+MCF MDPQ GKK+CYVQFP+RFDGIDRHDR SNRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

Q69V23 Probable cellulose synthase A catalytic subunit 3 [UDP-forming]4.0e-2774.63Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDP-QGKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAP++LNLDCDHY+NN+K ++EAMCF MDP  GKK+CYVQFP+RFDGIDRHDR +NRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDP-QGKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

Q94JQ6 Cellulose synthase A catalytic subunit 6 [UDP-forming]8.1e-2876.12Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        L+NAP++LN+DCDHY+NN+K +REAMCF MDPQ GKK+CYVQFP+RFDGIDRHDR SNRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

Q9AV71 Cellulose synthase A catalytic subunit 7 [UDP-forming]4.8e-2883.58Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPFILNLDCDHYVNN+K VREAMCF MD Q GKKLCYVQFP+RFDGIDRHDR +NRN VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

Q9SJ22 Probable cellulose synthase A catalytic subunit 9 [UDP-forming]4.8e-2876.12Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        L+NAP++LN+DCDHY+NN+K +REAMCF MDPQ GKK+CYVQFP+RFDGIDRHDR SNRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

Arabidopsis top hitse value%identityAlignment
AT2G21770.1 cellulose synthase A93.4e-2976.12Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        L+NAP++LN+DCDHY+NN+K +REAMCF MDPQ GKK+CYVQFP+RFDGIDRHDR SNRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

AT4G39350.1 cellulose synthase A29.9e-2974.63Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        L+NAP++LN+DCDHY+NN+K +RE+MCF MDPQ GKK+CYVQFP+RFDGIDRHDR SNRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

AT5G17420.1 Cellulose synthase family protein6.4e-2879.1Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPF+LNLDCDHYVNN+K VREAMCF MDPQ GKK+CYVQFP+RFDGID +DR +NRN VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

AT5G44030.1 cellulose synthase A43.8e-2877.61Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        LTNAPF+LNLDCDHY+NN+K +RE+MCF MDPQ GKKLCYVQFP+RFDGID +DR +NRNIVFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS

AT5G64740.1 cellulose synthase 65.8e-2976.12Show/hide
Query:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS
        L+NAP++LN+DCDHY+NN+K +REAMCF MDPQ GKK+CYVQFP+RFDGIDRHDR SNRN+VFFD++
Subjt:  LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQ-GKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCACAAATGCACCATTCATATTGAATCTGGATTGTGATCACTATGTCAACAACAACAAAGTTGTAAGGGAGGCCATGTGCTTTCCAATGGATCCTCAGGGCAAGAAGCT
ATGCTATGTTCAGTTTCCTCGAAGATTTGATGGTATTGATCGTCACGATAGATGTTCTAATCGAAATATTGTGTTCTTCGATGTAAGT
mRNA sequenceShow/hide mRNA sequence
CTCACAAATGCACCATTCATATTGAATCTGGATTGTGATCACTATGTCAACAACAACAAAGTTGTAAGGGAGGCCATGTGCTTTCCAATGGATCCTCAGGGCAAGAAGCT
ATGCTATGTTCAGTTTCCTCGAAGATTTGATGGTATTGATCGTCACGATAGATGTTCTAATCGAAATATTGTGTTCTTCGATGTAAGT
Protein sequenceShow/hide protein sequence
LTNAPFILNLDCDHYVNNNKVVREAMCFPMDPQGKKLCYVQFPRRFDGIDRHDRCSNRNIVFFDVS