CuGenDBv2

Gene ID	MS005374
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein SA
Genome location	scaffold1154:48242..49285
RNA-Seq Expression	MS005374
Synteny	MS005374
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0002181 - cytoplasmic translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001865 - Ribosomal protein S2 IPR005707 - Ribosomal protein S2, eukaryotic/archaeal IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004144441.1 40S ribosomal protein SA isoform X1 [Cucumis sativus]

9.2e-81

66.67

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIV IENP DIIVQSARPYGQRAVLK AQ+TGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGH+WDVMVDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAP-----VAPP---IQWFEQ----VAADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPD++PAP     V PP   ++W ++    +A+DGWDAA   AP PAP+ EGGAP AS WF
Subjt:  PDAQWGAPDVVPAP-----VAPP---IQWFEQ----VAADGWDAAPAPAPAPAPAVEGGAPPASGWF

XP_022152685.1 40S ribosomal protein SA-like [Momordica charantia]

1.6e-85

71.76

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGHKWDVMVDLFFYREPEEAKEQEEEEAVA PDYGIADFGAAPLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAPVAPP---IQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPDVVPA  APP   ++W ++     AADGWDAA    P PAPAVEGGAPPASGWF
Subjt:  PDAQWGAPDVVPAPVAPP---IQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF

XP_022155491.1 40S ribosomal protein SA-like [Momordica charantia]

1.3e-82

69.47

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGHKWDVMVDLFFYREPEEAKEQEEEEA APPDYGIADFGAAPLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPD-VVPAPVAP--PIQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF
        PDAQWGAPD VVPA  AP   ++W ++     AADGWDA     P PAPAV+  APPA+ WF
Subjt:  PDAQWGAPD-VVPAPVAP--PIQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF

XP_031738662.1 40S ribosomal protein SA isoform X2 [Cucumis sativus]

7.1e-81

66.92

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIV IENP DIIVQSARPYGQRAVLK AQ+TGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGH+WDVMVDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAP-----VAPP---IQWFEQ---VAADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPD++PAP     V PP   ++W ++   +A+DGWDAA   AP PAP+ EGGAP AS WF
Subjt:  PDAQWGAPDVVPAP-----VAPP---IQWFEQ---VAADGWDAAPAPAPAPAPAVEGGAPPASGWF

XP_038903491.1 40S ribosomal protein SA-like [Benincasa hispida]

8.3e-82

67.05

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Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIV IENP DIIVQSARPYGQRAVLK AQ+TGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGH+WDVMVDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G A LV+SDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAP---VAPP---IQWFEQ---VAADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPDVVPAP   +APP   ++W ++   +A+DGWDAA    P PAP+ EGGAPPA+ WF
Subjt:  PDAQWGAPDVVPAP---VAPP---IQWFEQ---VAADGWDAAPAPAPAPAPAVEGGAPPASGWF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L946 40S ribosomal protein SA

4.5e-81

66.67

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIV IENP DIIVQSARPYGQRAVLK AQ+TGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGH+WDVMVDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAP-----VAPP---IQWFEQ----VAADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPD++PAP     V PP   ++W ++    +A+DGWDAA   AP PAP+ EGGAP AS WF
Subjt:  PDAQWGAPDVVPAP-----VAPP---IQWFEQ----VAADGWDAAPAPAPAPAPAVEGGAPPASGWF

A0A1S3CDH5 40S ribosomal protein SA

5.8e-81

67.17

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIV IENP DIIVQSARPYGQRAVLK AQ+TGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGH+WDVMVDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAP----VAPP---IQWFEQ---VAADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPD++PAP    V PP   ++W ++   +A+DGWDAA    P PAPA EGGAP AS WF
Subjt:  PDAQWGAPDVVPAP----VAPP---IQWFEQ---VAADGWDAAPAPAPAPAPAVEGGAPPASGWF

A0A6J1DEM6 40S ribosomal protein SA

7.9e-86

71.76

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGHKWDVMVDLFFYREPEEAKEQEEEEAVA PDYGIADFGAAPLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAPVAPP---IQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF
         DAQWGAPDVVPA  APP   ++W ++     AADGWDAA    P PAPAVEGGAPPASGWF
Subjt:  PDAQWGAPDVVPAPVAPP---IQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF

A0A6J1DWT5 40S ribosomal protein SA

6.2e-83

69.47

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI AGHKWDVMVDLFFYREPEEAKEQEEEEA APPDYGIADFGAAPLVASDQWAGQ+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPD-VVPAPVAP--PIQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF
        PDAQWGAPD VVPA  AP   ++W ++     AADGWDA     P PAPAV+  APPA+ WF
Subjt:  PDAQWGAPD-VVPAPVAP--PIQWFEQV----AADGWDAAPAPAPAPAPAVEGGAPPASGWF

A0A6J1IX68 40S ribosomal protein SA

5.5e-79

66.79

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIV IENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSFNEPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPP-DYGIADFGAAPLVASDQWAGQ
        I+F                      SIGCLFWLL RMVLQMRGTI AG KWDVMVDLFFYREPEEAKE+EEEEA+A P DYGIADFGAAPLV SDQWAGQ
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPP-DYGIADFGAAPLVASDQWAGQ

Query:  VPDAQWGAPDVVPAP----VAPP---IQWFEQ--VAADGWDAAPAPAPAPAPAVEGGAPPASGWF
        + DAQWGAPDVVP P    V PP   ++W ++   ++DGW AA    P PAP+VEGGAPPA+ WF
Subjt:  VPDAQWGAPDVVPAP----VAPP---IQWFEQ--VAADGWDAAPAPAPAPAPAVEGGAPPASGWF

SwissProt top hits

e value

%identity

Alignment

A5BUU4 40S ribosomal protein SA

2.3e-66

58.43

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSF+EPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPL--VASDQWAG
        I+F                      SIGCLFWLL RMVLQMR TI  GHKWDVMVDLFFYREPEE KEQE +E VA PDYGI D+ A  L  +    W  
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPL--VASDQWAG

Query:  QVPDA-QWGA--PDVVPAPVAPPIQWFE--------QVAADGWDAAPAPAPAPAPAVEGGAPPASGW
         + DA QWGA  P V P P  P   W +         +A DGWDAA AP  A  P V  G PP +GW
Subjt:  QVPDA-QWGA--PDVVPAPVAPPIQWFE--------QVAADGWDAAPAPAPAPAPAVEGGAPPASGW

O22518 40S ribosomal protein SA

9.3e-60

57.31

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKLQLAARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSF+EPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI  G KWDVMVDLFFYREPEEAK+QEEEEA A  DY I DF A  + A  QW G +
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAPVAPPIQW---FEQVAADGWD---AAPAPAPAPAPAVEGGAPPASGW
         D  W      P P  P + W    E  AA G D   A P P   P P         SGW
Subjt:  PDAQWGAPDVVPAPVAPPIQW---FEQVAADGWD---AAPAPAPAPAPAVEGGAPPASGW

O65751 40S ribosomal protein SA

2.1e-59

55.47

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIEN-PDIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTW+KL LAAR+IVAIEN  DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSF+EPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIEN-PDIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRGTI  G KWDVMVDLFFYREPEEAK+ EE+E VA PDY IADF  + + +  QW   +
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAPVAPPIQWF--EQVAADGWDAAPAPAPAPAPAVEGGAPPASGW
         D  W      P P  P + W   E VA D  +A P P   P   +E  + PA+GW
Subjt:  PDAQWGAPDVVPAPVAPPIQWF--EQVAADGWDAAPAPAPAPAPAVEGGAPPASGW

O80377 40S ribosomal protein SA

7.6e-62

58.75

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTWEKL LAARVIV+IENP DIIVQSARPYGQRAVLK AQYTGA           FTNQLQTSF+EPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV
        I+F                      SIGCLFWLL RMVLQMRG I  GHKW+VMVDLFFYREPEE K+QEEE+ +   DY +AD+ AAP+  +DQW   +
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQV

Query:  PDAQWGAPDVVPAPVAPPI-QWFE--QVAADGWDAAPAPAPAPAPAVEGGAPPASGW
        PDAQWG   V PA  A P   W +   +A DGWDAA AP P P  AV    P  +GW
Subjt:  PDAQWGAPDVVPAPVAPPI-QWFE--QVAADGWDAAPAPAPAPAPAVEGGAPPASGW

Q08682 40S ribosomal protein Sa-1

3.9e-58

55.6

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYI NL KTWEKLQ+AARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQ+QTSF+EPRLLILTD RTDHQ +       I +
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ
        I+F                      SIGCLFWLL RMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA    +YG        +V  DQW   Q
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ

Query:  VPDAQWGAPDVVPAPVAP-PIQWFEQVAA---DGWDAAPAPAPAPAPAVE
        +PDA W      P   AP    W +  AA    GW+AA  P+ APA   E
Subjt:  VPDAQWGAPDVVPAPVAP-PIQWFEQVAA---DGWDAAPAPAPAPAPAVE

Arabidopsis top hits

e value

%identity

Alignment

AT1G72370.1 40s ribosomal protein SA

2.8e-59

55.6

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYI NL KTWEKLQ+AARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQ+QTSF+EPRLLILTD RTDHQ +       I +
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ
        I+F                      SIGCLFWLL RMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA    +YG        +V  DQW   Q
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ

Query:  VPDAQWGAPDVVPAPVAP-PIQWFEQVAA---DGWDAAPAPAPAPAPAVE
        +PDA W      P   AP    W +  AA    GW+AA  P+ APA   E
Subjt:  VPDAQWGAPDVVPAPVAP-PIQWFEQVAA---DGWDAAPAPAPAPAPAVE

AT1G72370.2 40s ribosomal protein SA

9.6e-60

55.69

Show/hide

Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYI NL KTWEKLQ+AARVIVAIENP DIIVQSARPYGQRAVLK AQYTGA           FTNQ+QTSF+EPRLLILTD RTDHQ +       I +
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTGA----------AFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ
        I+F                      SIGCLFWLL RMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA    +YG        +V  DQW   Q
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ

Query:  VPDAQWGAPDVVPAPVAPPIQWFEQVAADGWDAAPAPAPAPAPAVE
        +PDA W      P   AP    +   A  GW+AA  P+ APA   E
Subjt:  VPDAQWGAPDVVPAPVAPPIQWFEQVAADGWDAAPAPAPAPAPAVE

AT3G04770.1 40s ribosomal protein SA B

1.3e-40

62.18

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Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTG----------AAFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTW+KLQ+AARVIVAIENP DIIVQSARPYGQRAVLK AQYTG            FTNQ+QTSF+EPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTG----------AAFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVD
        I+F                      SIGCLFWLL RMVLQMRGTI A  KWDVMV+
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVD

AT3G04770.2 40s ribosomal protein SA B

6.4e-56

55.88

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Query:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTG----------AAFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV
        GIYIINL KTW+KLQ+AARVIVAIENP DIIVQSARPYGQRAVLK AQYTG            FTNQ+QTSF+EPRLLILTD RTDHQ +       I  
Subjt:  GIYIINLAKTWEKLQLAARVIVAIENP-DIIVQSARPYGQRAVLKLAQYTG----------AAFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVV

Query:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ
        I+F                      SIGCLFWLL RMVLQMRGTI A  KWDVMVDLFFYREPEEAK++ +EEA    DYG        +V  DQW   Q
Subjt:  ISF----------------------SIGCLFWLLVRMVLQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQ

Query:  VPDAQWGAPDVVPAPVAPPIQWFEQVAADGWDAAPAPA
        + DA W      P   AP +       A GW+AA  PA
Subjt:  VPDAQWGAPDVVPAPVAPPIQWFEQVAADGWDAAPAPA

Sequences

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CDS sequence

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GGAATTTACATCATCAACCTTGCTAAGACATGGGAGAAACTCCAATTGGCTGCCAGAGTAATTGTGGCTATTGAGAATCCTGATATCATTGTCCAGTCTGCTAGG
CCTTATGGTCAGAGAGCCGTTTTGAAGCTTGCTCAATACACTGGTGCGGCATTCACCAACCAGCTTCAGACCTCATTCAATGAACCACGACTTCTGATACTTACT
GATTCTAGAACTGATCATCAGGTGCTTAACCCTATTAAGAGATTAATAATAGTTGTTATAAGTTTTAGTATAGGATGTCTGTTTTGGCTTCTGGTGAGGATGGTT
CTGCAGATGCGTGGAACAATTCATGCTGGGCACAAGTGGGACGTGATGGTGGATTTATTTTTCTATCGGGAGCCTGAGGAAGCTAAGGAGCAAGAAGAAGAAGAG
GCTGTTGCGCCTCCAGATTATGGCATTGCAGATTTCGGAGCTGCTCCGCTTGTTGCTTCAGATCAATGGGCTGGACAGGTACCTGATGCTCAGTGGGGTGCTCCT
GATGTGGTTCCAGCTCCTGTTGCTCCACCCATCCAGTGGTTCGAGCAAGTTGCAGCAGACGGATGGGATGCAGCACCAGCACCAGCGCCAGCACCAGCGCCAGCA
GTTGAAGGTGGTGCACCTCCGGCTTCCGGTTGGTTC

mRNA sequence

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Protein sequence

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GIYIINLAKTWEKLQLAARVIVAIENPDIIVQSARPYGQRAVLKLAQYTGAAFTNQLQTSFNEPRLLILTDSRTDHQVLNPIKRLIIVVISFSIGCLFWLLVRMV
LQMRGTIHAGHKWDVMVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPIQWFEQVAADGWDAAPAPAPAPAPA
VEGGAPPASGWF

MS005374 (gene) of Bitter gourd (TR) v1 genome