CuGenDBv2

Gene ID	MS005387
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LysM domain-containing protein
Genome location	scaffold451:38565..38810
RNA-Seq Expression	MS005387
Synteny	MS005387
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR018392 - LysM domain IPR036779 - LysM domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAN62985.1 hypothetical protein VITISV_027722 [Vitis vinifera]

4.4e-20

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Query:  SSSCYCAIVVFAALMMF-------VASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+++ A +++        + + ES  G     RPCDEIYVVGEGETLHTIS KCGDP+IVEQNP I D DDVFPGLVI+ITP   RKLL
Subjt:  SSSCYCAIVVFAALMMF-------VASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

EEF51460.1 conserved hypothetical protein [Ricinus communis]

5.2e-21

61.7

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Query:  SSSCYCAIVVFAALMM--FVASAESGG---------GRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+V+   +++   + S  S            RPCDEIYVVGEGETLHTIS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSSCYCAIVVFAALMM--FVASAESGG---------GRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

KAF3433048.1 hypothetical protein FNV43_RR24150 [Rhamnella rubrinervis]

2.0e-20

62.77

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Query:  SSSCYCAIVVFAALMMFVASAESG-----------GGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++S YCAI++  AL++  +  ES             GRPCDEIYVVGEGETLHTIS KCGDPFIVE NP IQD DDVFPGL+I+ITP  PRKLL
Subjt:  SSSCYCAIVVFAALMMFVASAESG-----------GGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]

2.6e-20

69.05

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Query:  SSCYCAIVVFAALMMFVASAESGGGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP----PRKLL
        +S +   V   AL++ VASAES   RPCD+IYVV EGETLHTISAKCGDPFIV+ NP IQDSDDVFPGL+IQITP     RKLL
Subjt:  SSCYCAIVVFAALMMFVASAESGGGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP----PRKLL

XP_002510858.2 uncharacterized protein LOC8258314 [Ricinus communis]

5.2e-21

61.7

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Query:  SSSCYCAIVVFAALMM--FVASAESGG---------GRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+V+   +++   + S  S            RPCDEIYVVGEGETLHTIS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSSCYCAIVVFAALMM--FVASAESGG---------GRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9P3 LysM domain-containing protein

1.2e-20

69.05

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Query:  SSCYCAIVVFAALMMFVASAESGGGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP----PRKLL
        +S +   V   AL++ VASAES   RPCD+IYVV EGETLHTISAKCGDPFIV+ NP IQDSDDVFPGL+IQITP     RKLL
Subjt:  SSCYCAIVVFAALMMFVASAESGGGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP----PRKLL

A0A438FHK7 LysM domain-containing protein

2.8e-20

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Query:  SSSCYCAIVVFAALMM-------FVASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+++ A +++        + + ES  G     RPCDEIYVVGEGETLHTIS KCGDP+IVEQNP I D DDVFPGLVI+ITP   RKLL
Subjt:  SSSCYCAIVVFAALMM-------FVASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

A5AZB4 LysM domain-containing protein

2.1e-20

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Query:  SSSCYCAIVVFAALMMF-------VASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+++ A +++        + + ES  G     RPCDEIYVVGEGETLHTIS KCGDP+IVEQNP I D DDVFPGLVI+ITP   RKLL
Subjt:  SSSCYCAIVVFAALMMF-------VASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

B9R9I3 LysM domain-containing protein

2.5e-21

61.7

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Query:  SSSCYCAIVVFAALMM--FVASAESGG---------GRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+V+   +++   + S  S            RPCDEIYVVGEGETLHTIS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSSCYCAIVVFAALMM--FVASAESGG---------GRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

F6HP74 LysM domain-containing protein

2.8e-20

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Query:  SSSCYCAIVVFAALMM-------FVASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        ++SCYCA+++ A +++        + + ES  G     RPCDEIYVVGEGETLHTIS KCGDP+IVEQNP I D DDVFPGLVI+ITP   RKLL
Subjt:  SSSCYCAIVVFAALMM-------FVASAESGGG-----RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52790.1 peptidoglycan-binding LysM domain-containing protein

3.1e-16

52.08

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Query:  SCYCAIVVFAALMMFVAS---AESGG------------------GRP-CDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP
        S YCA  VFAA+M+ + S   A+ G                    RP CDEIY V EGETL TIS KCGDP+IVE NP I D DD+FPGL+I+ITP
Subjt:  SCYCAIVVFAALMMFVAS---AESGG------------------GRP-CDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein

7.5e-18

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Query:  RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQI
        RPC+E+YVVGEG+TLH+IS KCGDPFIVE+NP I D DDVFPGL+I++
Subjt:  RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein

4.7e-20

52.38

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Query:  SCYCAIVVFAALMMFVASAESGGG----------RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP
        S +C+ VV  +L++ ++  E+             +PC+EIY+VGEGETLHTI  KCGDPFIVE+NP I D DDVFPGLV++I P
Subjt:  SCYCAIVVFAALMMFVASAESGGG----------RPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP

Sequences

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CDS sequence

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TCTTCAAGCTGCTACTGCGCAATCGTCGTCTTCGCGGCGCTGATGATGTTCGTCGCCTCCGCCGAATCCGGCGGCGGCCGCCCTTGCGACGAGATCTACGTCGTCGGAGA
AGGCGAGACGCTGCACACCATCAGCGCCAAGTGCGGCGATCCGTTCATTGTAGAGCAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTCGTCATTCAAA
TTACGCCCCCGAGGAAGTTGTTGTTC

mRNA sequence

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Protein sequence

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SSSCYCAIVVFAALMMFVASAESGGGRPCDEIYVVGEGETLHTISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITPPRKLLF

MS005387 (gene) of Bitter gourd (TR) v1 genome