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MS005398 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005398
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold451:119408..119635
RNA-Seq ExpressionMS005398
SyntenyMS005398
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG66120.1 hypothetical protein EZV62_007395 [Acer yangbiense]7.2e-0953.03Show/hide
Query:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILN
        R+L LKSQL  +RK+  +INQYL Q K+ ADK +++ EP+S + H+ +  EGLG EY+A VTSI N
Subjt:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILN

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]6.3e-1366.67Show/hide
Query:  QLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ
        ++Q ++KD LS++QYLA+IKE   KLSSI EPISL+DHIS+I+EGLG+EYNA VTSI N+
Subjt:  QLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]3.7e-1354.79Show/hide
Query:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQL
        R++ LK++LQ +RKD  S++QYLA+IKE ADK +++ EP+S +DH++H+L+GLG EYNA VTSI N+  S  L
Subjt:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQL

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]2.2e-1059.02Show/hide
Query:  SQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ
        SQLQ I+KD L+++QYLAQIK+  D  ++I EP+S +DH+S+ILEGLG EYN  V+SI N+
Subjt:  SQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]1.1e-1262.5Show/hide
Query:  LTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILN
        ++LK++LQ IRKD+LS++QYL+QIK+ ADK S + E IS +DH++HIL+GLG EYNA VTSI N
Subjt:  LTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILN

TrEMBL top hitse value%identityAlignment
A0A151QQI3 Uncharacterized protein6.6e-0848.65Show/hide
Query:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQLT
        +V  LK+QL+ IRK D S+N YL  IK+  D L+S+  PI   +HIS IL+GL  EYN+ VTSI+++   Y +T
Subjt:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQLT

A0A5C7I9Y1 Uncharacterized protein3.5e-0953.03Show/hide
Query:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILN
        R+L LKSQL  +RK+  +INQYL Q K+ ADK +++ EP+S + H+ +  EGLG EY+A VTSI N
Subjt:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILN

A0A5C7IHH0 Uncharacterized protein4.5e-0952.31Show/hide
Query:  LTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ
        L  +SQL  ++K+  +INQYL Q KE  DK ++I EP+S +DH+ ++LEGLG EY+A VTSI N+
Subjt:  LTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ

A0A6J1D6N7 uncharacterized protein LOC1110174383.0e-1366.67Show/hide
Query:  QLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ
        ++Q ++KD LS++QYLA+IKE   KLSSI EPISL+DHIS+I+EGLG+EYNA VTSI N+
Subjt:  QLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQ

A0A6J1DQX7 uncharacterized protein LOC1110223151.8e-1354.79Show/hide
Query:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQL
        R++ LK++LQ +RKD  S++QYLA+IKE ADK +++ EP+S +DH++H+L+GLG EYNA VTSI N+  S  L
Subjt:  RVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTCGGGTCCTAACTTTGAAATCCCAATTACAAGTGATTCGAAAGGATGACCTTTCAATTAATCAGTATTTAGCTCAGATTAAAGAGACAGCAGATAAATTATCTTCTAT
TGCGGAACCTATTTCTCTCCAGGATCATATTTCACATATTTTGGAAGGCTTGGGTGTCGAATACAATGCAACGGTCACCTCTATACTGAACCAAAGACGTTCGTACCAAC
TTACTTTT
mRNA sequenceShow/hide mRNA sequence
ACTCGGGTCCTAACTTTGAAATCCCAATTACAAGTGATTCGAAAGGATGACCTTTCAATTAATCAGTATTTAGCTCAGATTAAAGAGACAGCAGATAAATTATCTTCTAT
TGCGGAACCTATTTCTCTCCAGGATCATATTTCACATATTTTGGAAGGCTTGGGTGTCGAATACAATGCAACGGTCACCTCTATACTGAACCAAAGACGTTCGTACCAAC
TTACTTTT
Protein sequenceShow/hide protein sequence
TRVLTLKSQLQVIRKDDLSINQYLAQIKETADKLSSIAEPISLQDHISHILEGLGVEYNATVTSILNQRRSYQLTF