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MS005421 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005421
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytochrome c oxidase subunit 6B
Genome locationscaffold641:79558..80249
RNA-Seq ExpressionMS005421
SyntenyMS005421
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsIPR036549 - Cytochrome c oxidase, subunit VIb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU38205.1 hypothetical protein TSUD_226270 [Trifolium subterraneum]2.0e-2246.32Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN
        MS AQMDPHD+MR+RD+SKVARGEQAPRPAHE+GTVS PPPP S++ A     TN    ++ RTGE+  +     SP +   +R           H +  
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN

Query:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
         ++ + C+QKKGE  PECQ +  ++ S+CP EW+ +
Subjt:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

XP_008465918.1 PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo]3.0e-2652.86Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGED----SHKVFFFLSPPTGKLLRRRRVSNVLNFSH
        MSA+Q+DPHD+MRSRD+SKVARGEQAPRPAHEYGTVSKPPPP S+S   P  QTN    D  R+G +     +KV       T     R   +N     H
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGED----SHKVFFFLSPPTGKLLRRRRVSNVLNFSH

Query:  IFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
         +   L+   CVQKKGEH PEC+    YY SLCP EWV +
Subjt:  IFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

XP_031737980.1 putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus]2.1e-2755.8Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGED-SHKVFFFLSPPTGKLLRRRRVSNVLNFSHI
        MSA+Q+DPHD+MRSRD+SKVARGEQAPRPAHEYGTVSKPPPP SSS   P  QTN    D D+ R  ED  +KV   +    G      R        H 
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGED-SHKVFFFLSPPTGKLLRRRRVSNVLNFSHI

Query:  FINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVR
        +   L+   CVQKKGEH PEC+   +YY SLCP EWVR
Subjt:  FINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVR

XP_031737981.1 cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]6.1e-2754.68Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGED-SHKVFFFLSPPTGKLLRRRRVSNVLNFSHI
        MSA+Q+DPHD+MRSRD+SKVARGEQAPRPAHEYGTVSKPPPP SSS   P  QTN    D D+ R  ED  +KV   +    G      R        H 
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGED-SHKVFFFLSPPTGKLLRRRRVSNVLNFSHI

Query:  FINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
        +   L+   CVQKKGEH PEC+   +YY SLCP EWV +
Subjt:  FINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

XP_038886888.1 putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]2.1e-2754.35Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIF
        MSAAQ+DPHD+MRSRDISKV RGEQAPRPAHEYGTVSKPPPP SSS   P  QTN    D D+ R GED+      L      L    R        H +
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIF

Query:  INPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
           L+   CVQK+GEH PEC+   +YY SLCP EW+ +
Subjt:  INPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

TrEMBL top hitse value%identityAlignment
A0A0A0LEH8 Uncharacterized protein3.0e-2754.68Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGED-SHKVFFFLSPPTGKLLRRRRVSNVLNFSHI
        MSA+Q+DPHD+MRSRD+SKVARGEQAPRPAHEYGTVSKPPPP SSS   P  QTN    D D+ R  ED  +KV   +    G      R        H 
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTN--PTDVDQNRTGED-SHKVFFFLSPPTGKLLRRRRVSNVLNFSHI

Query:  FINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
        +   L+   CVQKKGEH PEC+   +YY SLCP EWV +
Subjt:  FINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

A0A1S3CQ05 putative cytochrome c oxidase subunit 6b-like1.5e-2652.86Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGED----SHKVFFFLSPPTGKLLRRRRVSNVLNFSH
        MSA+Q+DPHD+MRSRD+SKVARGEQAPRPAHEYGTVSKPPPP S+S   P  QTN    D  R+G +     +KV       T     R   +N     H
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGED----SHKVFFFLSPPTGKLLRRRRVSNVLNFSH

Query:  IFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
         +   L+   CVQKKGEH PEC+    YY SLCP EWV +
Subjt:  IFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

A0A2Z6NQQ0 Uncharacterized protein9.9e-2346.32Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN
        MS AQMDPHD+MR+RD+SKVARGEQAPRPAHE+GTVS PPPP S++ A     TN    ++ RTGE+  +     SP +   +R           H +  
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN

Query:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
         ++ + C+QKKGE  PECQ +  ++ S+CP EW+ +
Subjt:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

A0A5D3E4S8 Putative cytochrome c oxidase subunit 6b-like1.5e-2652.86Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGED----SHKVFFFLSPPTGKLLRRRRVSNVLNFSH
        MSA+Q+DPHD+MRSRD+SKVARGEQAPRPAHEYGTVSKPPPP S+S   P  QTN    D  R+G +     +KV       T     R   +N     H
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGED----SHKVFFFLSPPTGKLLRRRRVSNVLNFSH

Query:  IFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
         +   L+   CVQKKGEH PEC+    YY SLCP EWV +
Subjt:  IFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

V7CH48 Uncharacterized protein1.2e-2044.85Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN
        MSAAQ+DPHD+MR+RD++KVARG+QAPRPAH+YGTVS PPPP S+     PG TN      N+ G+        +S    +L      S+     H +  
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN

Query:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ
         ++   C+Q+KGE  PECQ L  Y+ S CP+EW+ +
Subjt:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWVRQ

SwissProt top hitse value%identityAlignment
Q9LPJ2 Putative cytochrome c oxidase subunit 6b-like6.2e-1439.55Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN
        MS+AQMDPHD+MRSRDISKVARG+QAPRPAH  GTVS PP  +++  A        TD                       +  R  V+N     H F  
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN

Query:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV
         ++   C++K G    +C  L  Y  S+CP E V
Subjt:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV

Q9S7L9 Cytochrome c oxidase subunit 6b-19.9e-0443.59Show/hide
Query:  HIFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV
        H F   ++   CV  KG+  PEC    ++Y SLCP+EWV
Subjt:  HIFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV

Arabidopsis top hitse value%identityAlignment
AT1G22450.1 cytochrome C oxidase 6B7.0e-0543.59Show/hide
Query:  HIFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV
        H F   ++   CV  KG+  PEC    ++Y SLCP+EWV
Subjt:  HIFINPLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV

AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein4.4e-1539.55Show/hide
Query:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN
        MS+AQMDPHD+MRSRDISKVARG+QAPRPAH  GTVS PP  +++  A        TD                       +  R  V+N     H F  
Subjt:  MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFIN

Query:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV
         ++   C++K G    +C  L  Y  S+CP E V
Subjt:  PLKRKVCVQKKGEHVPECQMLVQYYASLCPAEWV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGGCTCAGATGGATCCTCACGATCAGATGAGATCCAGAGACATCAGCAAGGTGGCTCGAGGCGAGCAAGCCCCAAGGCCTGCCCACGAATATGGCACCGTTTC
GAAGCCGCCGCCGCCTCAGTCCTCCTCCGGTGCCGCTCCGCCCGGCCAGACCAACCCCACTGACGTGGATCAGAACCGCACCGGCGAAGACAGCCACAAGGTCTTCTTCT
TTCTCTCTCCTCCTACAGGAAAACTGCTACGACGTCGTAGAGTTTCTAATGTTTTAAATTTTAGCCATATTTTTATTAACCCTCTAAAAAGAAAAGTGTGCGTGCAGAAG
AAGGGGGAACACGTGCCTGAATGCCAAATGTTGGTCCAGTATTACGCATCTCTATGTCCTGCTGAATGGGTAAGACAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGGCTCAGATGGATCCTCACGATCAGATGAGATCCAGAGACATCAGCAAGGTGGCTCGAGGCGAGCAAGCCCCAAGGCCTGCCCACGAATATGGCACCGTTTC
GAAGCCGCCGCCGCCTCAGTCCTCCTCCGGTGCCGCTCCGCCCGGCCAGACCAACCCCACTGACGTGGATCAGAACCGCACCGGCGAAGACAGCCACAAGGTCTTCTTCT
TTCTCTCTCCTCCTACAGGAAAACTGCTACGACGTCGTAGAGTTTCTAATGTTTTAAATTTTAGCCATATTTTTATTAACCCTCTAAAAAGAAAAGTGTGCGTGCAGAAG
AAGGGGGAACACGTGCCTGAATGCCAAATGTTGGTCCAGTATTACGCATCTCTATGTCCTGCTGAATGGGTAAGACAA
Protein sequenceShow/hide protein sequence
MSAAQMDPHDQMRSRDISKVARGEQAPRPAHEYGTVSKPPPPQSSSGAAPPGQTNPTDVDQNRTGEDSHKVFFFLSPPTGKLLRRRRVSNVLNFSHIFINPLKRKVCVQK
KGEHVPECQMLVQYYASLCPAEWVRQ