CuGenDBv2

Gene ID	MS005429
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	vacuolar protein sorting-associated protein 55 homolog
Genome location	scaffold641:124742..125124
RNA-Seq Expression	MS005429
Synteny	MS005429
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0006048 - UDP-N-acetylglucosamine biosynthetic process (biological process) GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process) GO:0005768 - endosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0004610 - phosphoacetylglucosamine mutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007262 - Vps55/LEPROT

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004150170.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]

3.7e-31

76.6

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI
        +L+VIMY+LLPMPLLFFAGSD+SSL ++S DSW+NATKFLTGASTVGSIAIPVILKHA II WGA+A+DLSS +VFVVAILC++ MS +DDY++
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI

XP_008448742.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]

3.7e-31

76.6

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI
        +L+VIMY+LLPMPLLFFAGSD+SSL ++S DSW+NATKFLTGASTVGSIAIPVILKHA II WGA+A+DLSS +VFVVAILC++ MS +DDY++
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI

XP_022155500.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]

1.3e-31

78.02

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD+SSL +ES DSW+NATKFLTGAST+GSIAIP+ILKHA II WGALA+DLSS LVFV+AILC+LWM+ +DD
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

XP_022157395.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]

5.8e-40

95.79

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNIL
        +L+VIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANII WGALALDLSSLLVFVVAILCYLWMSNEDDYN L
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNIL

XP_038906097.1 vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida]

3.2e-30

73.4

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI
        +L+VIMY+LLPMPLLFFAGSD+SSL ++S +SW+NATKFLTGASTVGSIAIP+ILKHA II WGA+A+DLSS +VFV+AILC++ MS +DDY +
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5B3 Uncharacterized protein

1.8e-31

76.6

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI
        +L+VIMY+LLPMPLLFFAGSD+SSL ++S DSW+NATKFLTGASTVGSIAIPVILKHA II WGA+A+DLSS +VFVVAILC++ MS +DDY++
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI

A0A1S3BJT4 vacuolar protein sorting-associated protein 55 homolog

1.8e-31

76.6

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI
        +L+VIMY+LLPMPLLFFAGSD+SSL ++S DSW+NATKFLTGASTVGSIAIPVILKHA II WGA+A+DLSS +VFVVAILC++ MS +DDY++
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI

A0A5D3CIX3 Vacuolar protein sorting-associated protein 55-like protein

1.8e-31

76.6

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI
        +L+VIMY+LLPMPLLFFAGSD+SSL ++S DSW+NATKFLTGASTVGSIAIPVILKHA II WGA+A+DLSS +VFVVAILC++ MS +DDY++
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNI

A0A6J1DML0 vacuolar protein sorting-associated protein 55 homolog

6.2e-32

78.02

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD+SSL +ES DSW+NATKFLTGAST+GSIAIP+ILKHA II WGALA+DLSS LVFV+AILC+LWM+ +DD
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

A0A6J1DSZ0 vacuolar protein sorting-associated protein 55 homolog

2.8e-40

95.79

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNIL
        +L+VIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANII WGALALDLSSLLVFVVAILCYLWMSNEDDYN L
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNIL

SwissProt top hits

e value

%identity

Alignment

Q54VP1 Vacuolar protein sorting-associated protein 55 homolog

6.9e-04

35.42

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWM---SNEDDYN
        I+ V  Y L P P +     D  S SSE G ++ +   FLTG       AIP+IL H++IIS  ALA  ++  +     I+ +LW     N++D N
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWM---SNEDDYN

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog

7.6e-27

68.13

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD++SL +ES +SW+NA KFLTGAS VGS+AIP ILKHA +I WGALALDLSS +VF+VAIL Y+ + +  D
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

Arabidopsis top hits

e value

%identity

Alignment

AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein

5.4e-28

68.13

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD++SL +ES +SW+NA KFLTGAS VGS+AIP ILKHA +I WGALALDLSS +VF+VAIL Y+ + +  D
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein

5.4e-28

68.13

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD++SL +ES +SW+NA KFLTGAS VGS+AIP ILKHA +I WGALALDLSS +VF+VAIL Y+ + +  D
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein

5.4e-28

68.13

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD++SL +ES +SW+NA KFLTGAS VGS+AIP ILKHA +I WGALALDLSS +VF+VAIL Y+ + +  D
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein

5.4e-28

68.13

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD++SL +ES +SW+NA KFLTGAS VGS+AIP ILKHA +I WGALALDLSS +VF+VAIL Y+ + +  D
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein

5.4e-28

68.13

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Query:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD
        +L+VIMY+LLPMPLLFF GSD++SL +ES +SW+NA KFLTGAS VGS+AIP ILKHA +I WGALALDLSS +VF+VAIL Y+ + +  D
Subjt:  ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDD

Sequences

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CDS sequence

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ATTCTTGCAGTGATTATGTACATTCTTCTCCCAATGCCTTTGCTGTTTTTCGCTGGCTCCGATACTTCCTCACTATCTTCTGAATCTGGAGACAGCTGGGTGAATGCGAC
TAAATTTTTAACTGGAGCTTCAACGGTTGGAAGCATTGCAATACCTGTAATTTTGAAGCATGCTAATATTATCAGCTGGGGAGCACTTGCACTGGATCTCTCGTCCCTTT
TAGTCTTTGTGGTGGCCATTTTGTGTTATCTATGGATGAGTAATGAAGATGACTACAATATACTC

mRNA sequence

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Protein sequence

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ILAVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIISWGALALDLSSLLVFVVAILCYLWMSNEDDYNIL

MS005429 (gene) of Bitter gourd (TR) v1 genome