; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005434 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005434
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontobamovirus multiplication protein 2B
Genome locationscaffold641:167356..168275
RNA-Seq ExpressionMS005434
SyntenyMS005434
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0050896 - response to stimulus (biological process)
GO:0005488 - binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011526.1 Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-3269.44Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSL-------------------SHIV--------------SSCL
        MATASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQA  LSLSLSLSLSL                   S IV              SSCL
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSL-------------------SHIV--------------SSCL

Query:  QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE
        QAQL KLPKNLLAKA  IKNT KILEQMP+VVSSLDAYVEKGLE
Subjt:  QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGLE

XP_022156647.1 tobamovirus multiplication protein 2B [Momordica charantia]9.2e-3279.28Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPA                       QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLE
        SLDAYVEKGLE
Subjt:  SLDAYVEKGLE

XP_022952820.1 tobamovirus multiplication protein 2B isoform X5 [Cucurbita moschata]2.1e-3179.82Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLERFL
        SLDAYVEKGLER L
Subjt:  SLDAYVEKGLERFL

XP_023553908.1 tobamovirus multiplication protein 2B isoform X3 [Cucurbita pepo subsp. pepo]2.1e-3181.25Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLER
        SLDAYVEKGLER
Subjt:  SLDAYVEKGLER

XP_023553911.1 tobamovirus multiplication protein 2B isoform X5 [Cucurbita pepo subsp. pepo]7.1e-3280.7Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLERFL
        SLDAYVEKGLER L
Subjt:  SLDAYVEKGLERFL

TrEMBL top hitse value%identityAlignment
A0A6J1DSI3 tobamovirus multiplication protein 2B4.5e-3279.28Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPA                       QAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLE
        SLDAYVEKGLE
Subjt:  SLDAYVEKGLE

A0A6J1GL95 tobamovirus multiplication protein 2B isoform X11.1e-3080.18Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLE
        SLDAYVEKGLE
Subjt:  SLDAYVEKGLE

A0A6J1GLN3 tobamovirus multiplication protein 2B isoform X32.9e-3180.36Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLER
        SLDAYVEKGLER
Subjt:  SLDAYVEKGLER

A0A6J1GMT7 tobamovirus multiplication protein 2B isoform X59.9e-3279.82Show/hide
Query:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS
        MATASAS RS RDGTAK MVADHISQSVRSTSNLLHLMQQSS AQ         LSLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVS
Subjt:  MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVS

Query:  SLDAYVEKGLERFL
        SLDAYVEKGLER L
Subjt:  SLDAYVEKGLERFL

A0A6J1IA79 tobamovirus multiplication protein 2B isoform X44.2e-3077.88Show/hide
Query:  ATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSS
        A+ASAS RS RDGTAKAMVADHISQSVRSTSNLLHLMQQSS AQ          SLS S   SSCLQAQL KLPKNLLAKA  IKNT KILEQMP+VVSS
Subjt:  ATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSS

Query:  LDAYVEKGLERFL
        LDA+VEKGLER L
Subjt:  LDAYVEKGLERFL

SwissProt top hitse value%identityAlignment
Q8H960 Tobamovirus multiplication protein 2B1.3e-1753.57Show/hide
Query:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV
        MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +                       QAQL KLPKNLLAKA   K TG+ L Q+P+V
Subjt:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV

Query:  VSSLDAYVEKGL
        +SSLDA++E GL
Subjt:  VSSLDAYVEKGL

Arabidopsis top hitse value%identityAlignment
AT1G32370.1 tobamovirus multiplication 2B9.5e-1953.57Show/hide
Query:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV
        MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +                       QAQL KLPKNLLAKA   K TG+ L Q+P+V
Subjt:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV

Query:  VSSLDAYVEKGL
        +SSLDA++E GL
Subjt:  VSSLDAYVEKGL

AT1G32370.2 tobamovirus multiplication 2B9.5e-1953.57Show/hide
Query:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV
        MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +                       QAQL KLPKNLLAKA   K TG+ L Q+P+V
Subjt:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV

Query:  VSSLDAYVEKGL
        +SSLDA++E GL
Subjt:  VSSLDAYVEKGL

AT1G32370.3 tobamovirus multiplication 2B9.5e-1953.57Show/hide
Query:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV
        MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +                       QAQL KLPKNLLAKA   K TG+ L Q+P+V
Subjt:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV

Query:  VSSLDAYVEKGL
        +SSLDA++E GL
Subjt:  VSSLDAYVEKGL

AT1G32370.4 tobamovirus multiplication 2B9.5e-1953.57Show/hide
Query:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV
        MATAS ++R  SG D TAKA+VAD ISQ+V ST+NLLHLM+QSS +                       QAQL KLPKNLLAKA   K TG+ L Q+P+V
Subjt:  MATASASAR--SGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKV

Query:  VSSLDAYVEKGL
        +SSLDA++E GL
Subjt:  VSSLDAYVEKGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCTTCCGCGTCAGCTCGAAGCGGCAGAGATGGTACGGCCAAGGCCATGGTGGCCGATCACATTTCTCAGTCGGTACGATCCACTTCAAATCTCCTTCACCT
GATGCAGCAATCGTCTCCGGCCCAGGCATGGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATATAGTGTCGTCTTGTCTGCAGGCTCAGTTAATTAAGT
TGCCAAAGAACCTTTTGGCGAAAGCGCCTGCTATAAAAAATACTGGGAAAATCTTAGAGCAGATGCCGAAGGTGGTTTCATCCTTAGATGCATATGTAGAGAAGGGACTA
GAAAGGTTCTTATTGTCC
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGCTTCCGCGTCAGCTCGAAGCGGCAGAGATGGTACGGCCAAGGCCATGGTGGCCGATCACATTTCTCAGTCGGTACGATCCACTTCAAATCTCCTTCACCT
GATGCAGCAATCGTCTCCGGCCCAGGCATGGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATATAGTGTCGTCTTGTCTGCAGGCTCAGTTAATTAAGT
TGCCAAAGAACCTTTTGGCGAAAGCGCCTGCTATAAAAAATACTGGGAAAATCTTAGAGCAGATGCCGAAGGTGGTTTCATCCTTAGATGCATATGTAGAGAAGGGACTA
GAAAGGTTCTTATTGTCC
Protein sequenceShow/hide protein sequence
MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAWPLSLSLSLSLSLSHIVSSCLQAQLIKLPKNLLAKAPAIKNTGKILEQMPKVVSSLDAYVEKGL
ERFLLS