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MS005436 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005436
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationscaffold641:178549..178671
RNA-Seq ExpressionMS005436
SyntenyMS005436
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJD26297.1 Ycf3 [Trichosanthes kirilowii]3.6e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
QJR52957.1 photosystem I assembly protein Ycf3 [Herpetospermum pedunculosum]3.6e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
YP_009447451.1 photosystem I assembly protein Ycf3 [Cucurbita maxima]3.6e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
YP_009525187.1 photosystem I assembly protein Ycf3 [Hodgsonia macrocarpa]3.6e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
YP_009751823.1 photosystem I assembly protein Ycf3 [Indofevillea khasiana]3.6e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
TrEMBL top hitse value%identityAlignment
A0A1X9Q1C0 Photosystem I assembly protein ycf31.8e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
A0A218KG30 Photosystem I assembly protein Ycf31.8e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
A0A410HF83 Photosystem I assembly protein Ycf31.8e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
A0A6M3S6C6 Photosystem I assembly protein Ycf31.8e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
G3ETY6 Photosystem I assembly protein Ycf31.8e-15100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
SwissProt top hitse value%identityAlignment
A0ZZ36 Photosystem I assembly protein Ycf35.3e-1795.12Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q2L906 Photosystem I assembly protein Ycf35.3e-1795.12Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q49KZ7 Photosystem I assembly protein Ycf35.3e-1795.12Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q4VZH4 Photosystem I assembly protein Ycf34.7e-18100Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Q9MTP0 Photosystem I assembly protein Ycf35.3e-1795.12Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.7e-1687.8Show/hide
Query:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        DSE+AEAWF QAAEYWKQAI LTPGNYIEAQNWL ITRRF+
Subjt:  DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCTGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCAC
AAGGCGTTTCAAA
mRNA sequenceShow/hide mRNA sequence
GATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCTGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCAC
AAGGCGTTTCAAA
Protein sequenceShow/hide protein sequence
DSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK