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MS005452 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005452
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLSD1 zinc finger family protein
Genome locationscaffold641:335624..336451
RNA-Seq ExpressionMS005452
SyntenyMS005452
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO93183.1 Zinc finger, LSD1-type [Corchorus olitorius]9.5e-5998.29Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG S
Subjt:  RSVKCAVCNFVTSVGVS

TXG54321.1 hypothetical protein EZV62_019577 [Acer yangbiense]2.1e-5892.62Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++ AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVSIKLHF
        RSVKCAVCNFVTSVGVS+   +
Subjt:  RSVKCAVCNFVTSVGVSIKLHF

XP_021670378.1 protein LOL1 isoform X2 [Hevea brasiliensis]5.6e-5992.62Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++ AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHT+NLALEANQVAHV+CGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVSIKLHF
        RSVKCAVCNFVTSVG SI  H+
Subjt:  RSVKCAVCNFVTSVGVSIKLHF

XP_022155960.1 protein LOL1 [Momordica charantia]1.6e-5897.44Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++AAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG+S
Subjt:  RSVKCAVCNFVTSVGVS

XP_038887481.1 protein LOL1 isoform X1 [Benincasa hispida]1.6e-5893.39Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++A QSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVSIKLH
        RSVKCAVCNFVTSVGV +  H
Subjt:  RSVKCAVCNFVTSVGVSIKLH

TrEMBL top hitse value%identityAlignment
A0A0A0LEE4 Uncharacterized protein1.0e-5897.44Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        S+A QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG+S
Subjt:  RSVKCAVCNFVTSVGVS

A0A1R3JED2 Zinc finger, LSD1-type4.6e-5998.29Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG S
Subjt:  RSVKCAVCNFVTSVGVS

A0A5C7HBP8 Uncharacterized protein1.0e-5892.62Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++ AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVSIKLHF
        RSVKCAVCNFVTSVGVS+   +
Subjt:  RSVKCAVCNFVTSVGVSIKLHF

A0A6J1DRW1 protein LOL17.9e-5997.44Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++AAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG+S
Subjt:  RSVKCAVCNFVTSVGVS

M1BH58 LOL1 (LSD ONE LIKE 1)1.0e-5894.96Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        ++  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVSIK
        RSVKCAVCNFVTSVGVSIK
Subjt:  RSVKCAVCNFVTSVGVSIK

SwissProt top hitse value%identityAlignment
P94077 Protein LSD11.7e-3458.87Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML
        Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML

Query:  LMYQYGARSVKCAVCNFVTSVGVS
        LMY YGA SVKCAVC FVT+V +S
Subjt:  LMYQYGARSVKCAVCNFVTSVGVS

Q0J7V9 Protein LSD11.9e-5791.38Show/hide
Query:  SAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
        + AQSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGAR
Subjt:  SAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR

Query:  SVKCAVCNFVTSVGVS
        SVKCAVCNFVTSVG S
Subjt:  SVKCAVCNFVTSVGVS

Q2QMB3 Protein LOL26.7e-3961.86Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV
        QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R ATSV+CSCC TVNL    + +AH++CG C+ +LMY YGA SV
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV

Query:  KCAVCNFVTSVGVSIKLH
        KCA+CNF+T+ G++   H
Subjt:  KCAVCNFVTSVGVSIKLH

Q6ASS2 Protein LOL39.6e-3862.61Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS
        QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A +V+CSCC TVNL    N +AHVSCG CR  LMY YGA S
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS

Query:  VKCAVCNFVTSVGVS
        VKCA+C+++T+ G++
Subjt:  VKCAVCNFVTSVGVS

Q93ZB1 Protein LOL13.4e-5994.02Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG S
Subjt:  RSVKCAVCNFVTSVGVS

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 12.4e-6094.02Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG S
Subjt:  RSVKCAVCNFVTSVGVS

AT1G32540.2 lsd one like 12.4e-6094.02Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG S
Subjt:  RSVKCAVCNFVTSVGVS

AT1G32540.3 lsd one like 12.4e-6094.02Show/hide
Query:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
        S++ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGA
Subjt:  SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA

Query:  RSVKCAVCNFVTSVGVS
        RSVKCAVCNFVTSVG S
Subjt:  RSVKCAVCNFVTSVGVS

AT4G20380.1 LSD1 zinc finger family protein1.2e-3558.87Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML
        Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML

Query:  LMYQYGARSVKCAVCNFVTSVGVS
        LMY YGA SVKCAVC FVT+V +S
Subjt:  LMYQYGARSVKCAVCNFVTSVGVS

AT4G20380.2 LSD1 zinc finger family protein1.2e-3558.87Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML
        Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML

Query:  LMYQYGARSVKCAVCNFVTSVGVS
        LMY YGA SVKCAVC FVT+V +S
Subjt:  LMYQYGARSVKCAVCNFVTSVGVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTCAGCTGCACAAAGCCAGCTGGTGTGCTCCGGATGCAGAAACCTTTTGCTTTATCCAGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGT
ACCGCCTCCCGGCACAGAAATGGCACAATTGGTGTGTGGGGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACAAGCGTACAATGTTCTTGTTGCCATACCGTCA
ACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTCAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGCGCGCGCTCGGTGAAGTGTGCAGTATGCAATTTT
GTGACATCAGTTGGGGTCAGTATAAAACTTCATTTTTGTTCGTTA
mRNA sequenceShow/hide mRNA sequence
TCTTCAGCTGCACAAAGCCAGCTGGTGTGCTCCGGATGCAGAAACCTTTTGCTTTATCCAGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGT
ACCGCCTCCCGGCACAGAAATGGCACAATTGGTGTGTGGGGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACAAGCGTACAATGTTCTTGTTGCCATACCGTCA
ACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTCAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGCGCGCGCTCGGTGAAGTGTGCAGTATGCAATTTT
GTGACATCAGTTGGGGTCAGTATAAAACTTCATTTTTGTTCGTTA
Protein sequenceShow/hide protein sequence
SSAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNF
VTSVGVSIKLHFCSL