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MS005461 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005461
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold1030:13518..13988
RNA-Seq ExpressionMS005461
SyntenyMS005461
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134745.1 F-box protein At3g07870 [Cucumis sativus]3.9e-2548.19Show/hide
Query:  ILNLMTNEYFK-PPTSNPNHKNID--YYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY-
        ILN MTNEYFK P   + +H      Y YGLGF+P+TK Y +AR SF  + S   VEIF FGST      WTP+GF+P   ++D GVYF GGL WV    
Subjt:  ILNLMTNEYFK-PPTSNPNHKNID--YYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY-

Query:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
              I  I RLD+E+EKL++IS PQ  G    F  GV +G LYLT  +    +Y VWKM+++FS
Subjt:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

XP_004135796.1 putative F-box protein At1g46984 [Cucumis sativus]1.6e-3150.6Show/hide
Query:  CILNLMTNEYFKPPTSNPNHKNI-DYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----
        C+LN +TNEYFK PTS      + +Y YGLGFSP T  Y LAR  F H+   V+IFAFG+    S EWTP+G VP F  +  GVY NGGL WV +     
Subjt:  CILNLMTNEYFKPPTSNPNHKNI-DYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----

Query:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
            D   +I RLD++DEK ++IS P   GD     I V NG LYLTFC + +F+Y+ WKMEEDFS
Subjt:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

XP_008450717.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]2.0e-2949.7Show/hide
Query:  CILNLMTNEYFKPPTSN-PNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----
        C+LN +TNEYFK P       K  +Y YGLGFSP+T  Y LAR  F H    V+IFAFG+    S EWTPIG VP F  +  GVYFNGGL WV +     
Subjt:  CILNLMTNEYFKPPTSN-PNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----

Query:  -----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
             D   ++ RLD+ DEK  +IS P   GD     +GV NG LYLT C + +F+Y+VWKM+EDFS
Subjt:  -----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]1.7e-3353.66Show/hide
Query:  CILNLMTNEYFKPPTSNPNHKNI-DYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVPFCIDD-DGVYFNGGLSWVVAYD---
        C+LN MTNEYFK PT      ++ DY+YGLGFSPRTK Y LAR  +V     VEIFAFG+    S EWTP+G VP+ +++  GVYFNGGL WV       
Subjt:  CILNLMTNEYFKPPTSNPNHKNI-DYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVPFCIDD-DGVYFNGGLSWVVAYD---

Query:  --IIVIIIRLDIEDEKLDQISSPQLSGDVVAFA-IGVSNGILYLTFCMDLEFEYNVWKMEEDFS
          +  +I RLD+ED+K  QIS P    D   F  IGV N  LYLT C   +FEY+VWKMEEDFS
Subjt:  --IIVIIIRLDIEDEKLDQISSPQLSGDVVAFA-IGVSNGILYLTFCMDLEFEYNVWKMEEDFS

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]2.4e-2750.3Show/hide
Query:  CILNLMTNEYFK-PPTSNPNH--KNIDYYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVV--
        CILN MTNEYFK P   +  H      Y YGLGFSP TK Y +AR SF+ + S   VEIFAFG+T     EWTP+G +P   ++D GVYFNGGL W V  
Subjt:  CILNLMTNEYFK-PPTSNPNH--KNIDYYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVV--

Query:  --AYDIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYL-TFCMDLEFEYNVWKMEEDFS
            D    I RLDIE+EKL++IS P   G    F  GV +G LYL T+   ++  Y VWKMEE+ S
Subjt:  --AYDIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYL-TFCMDLEFEYNVWKMEEDFS

TrEMBL top hitse value%identityAlignment
A0A0A0KJY9 F-box domain-containing protein1.9e-2548.19Show/hide
Query:  ILNLMTNEYFK-PPTSNPNHKNID--YYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY-
        ILN MTNEYFK P   + +H      Y YGLGF+P+TK Y +AR SF  + S   VEIF FGST      WTP+GF+P   ++D GVYF GGL WV    
Subjt:  ILNLMTNEYFK-PPTSNPNHKNID--YYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY-

Query:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
              I  I RLD+E+EKL++IS PQ  G    F  GV +G LYLT  +    +Y VWKM+++FS
Subjt:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

A0A0A0M1M5 F-box domain-containing protein7.9e-3250.6Show/hide
Query:  CILNLMTNEYFKPPTSNPNHKNI-DYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----
        C+LN +TNEYFK PTS      + +Y YGLGFSP T  Y LAR  F H+   V+IFAFG+    S EWTP+G VP F  +  GVY NGGL WV +     
Subjt:  CILNLMTNEYFKPPTSNPNHKNI-DYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----

Query:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
            D   +I RLD++DEK ++IS P   GD     I V NG LYLTFC + +F+Y+ WKMEEDFS
Subjt:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

A0A1S3BQV8 putative F-box protein At3g211209.7e-3049.7Show/hide
Query:  CILNLMTNEYFKPPTSN-PNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----
        C+LN +TNEYFK P       K  +Y YGLGFSP+T  Y LAR  F H    V+IFAFG+    S EWTPIG VP F  +  GVYFNGGL WV +     
Subjt:  CILNLMTNEYFKPPTSN-PNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----

Query:  -----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
             D   ++ RLD+ DEK  +IS P   GD     +GV NG LYLT C + +F+Y+VWKM+EDFS
Subjt:  -----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

A0A5D3CIX9 Putative F-box protein9.7e-3049.7Show/hide
Query:  CILNLMTNEYFKPPTSN-PNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----
        C+LN +TNEYFK P       K  +Y YGLGFSP+T  Y LAR  F H    V+IFAFG+    S EWTPIG VP F  +  GVYFNGGL WV +     
Subjt:  CILNLMTNEYFKPPTSN-PNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY----

Query:  -----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
             D   ++ RLD+ DEK  +IS P   GD     +GV NG LYLT C + +F+Y+VWKM+EDFS
Subjt:  -----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

A0A5D3CM94 Putative F-box protein2.1e-2448.19Show/hide
Query:  ILNLMTNEYFK-PPTSNPNHKNID--YYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY-
        ILN MTNEYFK P   + +H      Y YGLGF+P+ K Y +AR SF  + S   VEIFAFGST      WT +GF+P   ++D GVYFNGGL WV    
Subjt:  ILNLMTNEYFK-PPTSNPNHKNID--YYYGLGFSPRTKHYNLARLSFVHESS--FVEIFAFGSTTSPSPEWTPIGFVP-FCIDDDGVYFNGGLSWVVAY-

Query:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS
              I  I RLDIE+E L++IS PQ  G    F  GV +G LYLT  +    +Y VWKM+++FS
Subjt:  ----DIIVIIIRLDIEDEKLDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTGCATATTAAATCTCATGACAAACGAGTACTTCAAACCTCCCACCTCCAATCCCAATCATAAGAATATAGATTATTATTACGGATTGGGATTTAGTCCTAGAACAAA
GCACTACAACTTGGCAAGACTCTCATTTGTACATGAGAGTAGCTTCGTGGAGATTTTTGCATTTGGCAGTACTACAAGTCCAAGTCCCGAATGGACCCCTATAGGATTTG
TGCCTTTTTGCATTGATGACGATGGTGTTTACTTCAATGGAGGCCTCTCTTGGGTGGTTGCATATGATATAATTGTCATCATTATTCGTTTGGATATTGAAGATGAGAAA
TTGGACCAAATTTCTTCTCCTCAACTCAGCGGAGATGTCGTTGCCTTTGCCATTGGAGTCTCTAATGGCATCCTCTATCTAACTTTTTGCATGGACTTAGAGTTTGAGTA
CAATGTGTGGAAGATGGAAGAAGATTTTTCA
mRNA sequenceShow/hide mRNA sequence
GCTTGCATATTAAATCTCATGACAAACGAGTACTTCAAACCTCCCACCTCCAATCCCAATCATAAGAATATAGATTATTATTACGGATTGGGATTTAGTCCTAGAACAAA
GCACTACAACTTGGCAAGACTCTCATTTGTACATGAGAGTAGCTTCGTGGAGATTTTTGCATTTGGCAGTACTACAAGTCCAAGTCCCGAATGGACCCCTATAGGATTTG
TGCCTTTTTGCATTGATGACGATGGTGTTTACTTCAATGGAGGCCTCTCTTGGGTGGTTGCATATGATATAATTGTCATCATTATTCGTTTGGATATTGAAGATGAGAAA
TTGGACCAAATTTCTTCTCCTCAACTCAGCGGAGATGTCGTTGCCTTTGCCATTGGAGTCTCTAATGGCATCCTCTATCTAACTTTTTGCATGGACTTAGAGTTTGAGTA
CAATGTGTGGAAGATGGAAGAAGATTTTTCA
Protein sequenceShow/hide protein sequence
ACILNLMTNEYFKPPTSNPNHKNIDYYYGLGFSPRTKHYNLARLSFVHESSFVEIFAFGSTTSPSPEWTPIGFVPFCIDDDGVYFNGGLSWVVAYDIIVIIIRLDIEDEK
LDQISSPQLSGDVVAFAIGVSNGILYLTFCMDLEFEYNVWKMEEDFS