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MS005462 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005462
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein At3g07870-like
Genome locationscaffold1030:20931..21242
RNA-Seq ExpressionMS005462
SyntenyMS005462
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132431.1 F-box protein At3g07870-like [Momordica charantia]3.9e-2160.82Show/hide
Query:  DLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNFSSA---NIINSCNGLLC
        D+IQLIFSKL  FNLP  RLVCKAWN+ +LTCK H  IS SNLF+AH SP+++ L C D     +G  SS+ SFSFHP+  S    +IINSCNGLLC
Subjt:  DLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNFSSA---NIINSCNGLLC

XP_022143297.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]6.1e-1952.73Show/hide
Query:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSN-LFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNF----SSAN
        +M+N   E+  +LI LIFSKL   NLP+ RLVCKAW+D+VLT K HP IS SN LF AHD  +D NL C       +GG  +VA F FHP+F    +  +
Subjt:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSN-LFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNF----SSAN

Query:  IINSCNGLLC
        I+N CNGLLC
Subjt:  IINSCNGLLC

XP_022154078.1 F-box/LRR-repeat protein At2g43260-like [Momordica charantia]2.4e-3174.26Show/hide
Query:  MKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTDMGGRSSVASFSFHPN--FSSANIINSCNGLL
        MKNINSEVL +LIQLIFSKLS  NLP+ RLVCKAWN+LVLTC  HP IS+S+LFF H SP D NL   DMGGRSSVASFSFH N  F+S +II+SCNGLL
Subjt:  MKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTDMGGRSSVASFSFHPN--FSSANIINSCNGLL

Query:  C
        C
Subjt:  C

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]3.5e-2259.26Show/hide
Query:  MKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAH-DSPYDRNLHCTDMG-----GRSSVASFSFHPNFSSA----NI
        +K  NSE+  D++QLIFSKL  FNLP  RLV   WN+LVL+CKF P IS SNLFFAH  S  DRNLHC D+      G S+VASF+FHPN SS     +I
Subjt:  MKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAH-DSPYDRNLHCTDMG-----GRSSVASFSFHPNFSSA----NI

Query:  INSCNGLL
        INSC+GL+
Subjt:  INSCNGLL

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]1.2e-1958.1Show/hide
Query:  KNINSEVLTD-LIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNF--SSANIINS
        K+ +SE+  D +IQ+I SK+ LFNLP+ RLVCKAWN+LVLTCKF P +  S+L  A+D P  RNL+C D     + G SSV SF+FHP F  SS +IINS
Subjt:  KNINSEVLTD-LIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNF--SSANIINS

Query:  CNGLL
        CNGLL
Subjt:  CNGLL

TrEMBL top hitse value%identityAlignment
A0A0A0M1M5 F-box domain-containing protein3.6e-1751.38Show/hide
Query:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAH-DSPYDRNLHCTDMG-----GRSSVASFSFHPNFSSAN----
        N+ N  SE+  D++QLIFSKL  FNLP  RLV   WN+L+ +CKF P IS S+LFFA   S    NLHC +       G S+VASF+FHP+ SS +    
Subjt:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAH-DSPYDRNLHCTDMG-----GRSSVASFSFHPNFSSAN----

Query:  IINSCNGLL
        IINSC+GL+
Subjt:  IINSCNGLL

A0A5D3CIX9 Putative F-box protein9.0e-1648.62Show/hide
Query:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAH-DSPYDRNLHCTD-----MGGRSSVASFSFHPNFSSAN----
        N+ N + E+  D++Q IFSK+  FNLP  RLV + WN+L+ +CKF P  S  +LFFA   S   RNLHC +     + G S VASF+FHP+F SA+    
Subjt:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAH-DSPYDRNLHCTD-----MGGRSSVASFSFHPNFSSAN----

Query:  IINSCNGLL
        IINSC+GL+
Subjt:  IINSCNGLL

A0A6J1BS93 F-box protein At3g07870-like1.9e-2160.82Show/hide
Query:  DLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNFSSA---NIINSCNGLLC
        D+IQLIFSKL  FNLP  RLVCKAWN+ +LTCK H  IS SNLF+AH SP+++ L C D     +G  SS+ SFSFHP+  S    +IINSCNGLLC
Subjt:  DLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNFSSA---NIINSCNGLLC

A0A6J1CQE2 F-box/kelch-repeat protein At3g06240-like3.0e-1952.73Show/hide
Query:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSN-LFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNF----SSAN
        +M+N   E+  +LI LIFSKL   NLP+ RLVCKAW+D+VLT K HP IS SN LF AHD  +D NL C       +GG  +VA F FHP+F    +  +
Subjt:  NMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSN-LFFAHDSPYDRNLHCTD-----MGGRSSVASFSFHPNF----SSAN

Query:  IINSCNGLLC
        I+N CNGLLC
Subjt:  IINSCNGLLC

A0A6J1DJA3 F-box/LRR-repeat protein At2g43260-like1.2e-3174.26Show/hide
Query:  MKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTDMGGRSSVASFSFHPN--FSSANIINSCNGLL
        MKNINSEVL +LIQLIFSKLS  NLP+ RLVCKAWN+LVLTC  HP IS+S+LFF H SP D NL   DMGGRSSVASFSFH N  F+S +II+SCNGLL
Subjt:  MKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTDMGGRSSVASFSFHPN--FSSANIINSCNGLL

Query:  C
        C
Subjt:  C

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGAAATCAACATGAAGAACATAAATTCAGAGGTTTTAACTGATTTGATTCAACTAATATTCTCTAAACTCTCGTTATTCAACTTGCCCAATCGTCGGTTGGTGTGTAA
AGCATGGAACGATCTGGTCTTAACCTGTAAGTTCCACCCTCTCATCTCAAATTCCAACCTTTTTTTTGCCCATGATTCTCCTTATGATCGAAATCTCCATTGCACAGACA
TGGGAGGGAGGAGCAGTGTTGCCTCGTTTAGCTTCCATCCAAATTTCTCCTCTGCTAATATTATCAATTCATGCAATGGACTCCTCTGCTTT
mRNA sequenceShow/hide mRNA sequence
AGAGAAATCAACATGAAGAACATAAATTCAGAGGTTTTAACTGATTTGATTCAACTAATATTCTCTAAACTCTCGTTATTCAACTTGCCCAATCGTCGGTTGGTGTGTAA
AGCATGGAACGATCTGGTCTTAACCTGTAAGTTCCACCCTCTCATCTCAAATTCCAACCTTTTTTTTGCCCATGATTCTCCTTATGATCGAAATCTCCATTGCACAGACA
TGGGAGGGAGGAGCAGTGTTGCCTCGTTTAGCTTCCATCCAAATTTCTCCTCTGCTAATATTATCAATTCATGCAATGGACTCCTCTGCTTT
Protein sequenceShow/hide protein sequence
REINMKNINSEVLTDLIQLIFSKLSLFNLPNRRLVCKAWNDLVLTCKFHPLISNSNLFFAHDSPYDRNLHCTDMGGRSSVASFSFHPNFSSANIINSCNGLLCF