; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005470 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005470
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear transcription factor Y subunit
Genome locationscaffold1030:116595..119192
RNA-Seq ExpressionMS005470
SyntenyMS005470
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001289 - Nuclear transcription factor Y subunit A
IPR018362 - CCAAT-binding factor, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139033.1 nuclear transcription factor Y subunit A-1 [Cucumis sativus]1.5e-12889.3Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL+S  NGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D Q
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC  QSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA   E HSDK NES Y LNDGSEQ+NGSS  NKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

XP_008450422.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo]4.5e-13089.67Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

XP_008450423.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis melo]4.5e-13089.67Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

XP_022154358.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia]4.8e-14899.63Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGN SSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

XP_038879324.1 nuclear transcription factor Y subunit A-1-like [Benincasa hispida]6.1e-12788.56Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR DAQ
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK+E +      DK NESGY LN+GSEQ+NGSS  N+AS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

TrEMBL top hitse value%identityAlignment
A0A0A0M2S3 Nuclear transcription factor Y subunit7.0e-12989.3Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL+S  NGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D Q
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC  QSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA   E HSDK NES Y LNDGSEQ+NGSS  NKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

A0A1S3BP85 Nuclear transcription factor Y subunit2.2e-13089.67Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

A0A1S3BPV3 Nuclear transcription factor Y subunit2.2e-13089.67Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

A0A5D3D5Q2 Nuclear transcription factor Y subunit2.2e-13089.67Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQL  DPNGAPSTS+YYEPWWRG+GYN  PLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND+NDEEDDV+KEVQATGSPHSAGSYR D +
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGEC TQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVG PHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KK IKARKPYLHESRHQHAIRR+R SGGRFAKK EA+  E HSDK +ESGY LNDGSEQ+ GSS MNKAS+
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

A0A6J1DK42 Nuclear transcription factor Y subunit2.3e-14899.63Show/hide
Query:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
        MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGN SSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ
Subjt:  MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQ

Query:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
        KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE
Subjt:  KMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAE

Query:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
        KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ
Subjt:  KKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ

SwissProt top hitse value%identityAlignment
Q84JP1 Nuclear transcription factor Y subunit A-79.1e-2544.85Show/hide
Query:  GSYRLDAQKMQHVSSTLP-AMHGECPTQSTQLELVG--HSIACASNPYQDPYYGGMMAFYGHQPLG--YPMVGAPHARMPLPIEIAQDPVFVNAKQYQGI
        GS+    Q+  H    +P A + E    S      G  +S+A    PY DPYY  + A       G    ++G     +PLP +  ++PVFVNAKQY GI
Subjt:  GSYRLDAQKMQHVSSTLP-AMHGECPTQSTQLELVG--HSIACASNPYQDPYYGGMMAFYGHQPLG--YPMVGAPHARMPLPIEIAQDPVFVNAKQYQGI

Query:  LRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRF---AKKDEANENEMHSDKANES
        LRRRQ+RA+ E++ K+IK+RKPYLHESRH HAIRR RG GGRF    K+DE +E+  H +K+N S
Subjt:  LRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRF---AKKDEANENEMHSDKANES

Q8VY64 Nuclear transcription factor Y subunit A-45.0e-2343.4Show/hide
Query:  AQKMQHVSSTLPAMHGECPTQSTQLELV-GHSIACASNPYQDPYYGGMMAFYGHQPLGYP-----MVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQ
        A+K +  S T P +     ++S     V    +A    PY DPYY  + A   + P  YP     ++G     +PL  +  ++PVFVNAKQY GILRRRQ
Subjt:  AQKMQHVSSTLPAMHGECPTQSTQLELV-GHSIACASNPYQDPYYGGMMAFYGHQPLGYP-----MVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQ

Query:  ARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRF--AKKDEANENEMHSDKANES
        +RAK EA  + IKA+KPY+HESRH HAIRR RG GGRF  AKK+  +  E     ++E+
Subjt:  ARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRF--AKKDEANENEMHSDKANES

Q93ZH2 Nuclear transcription factor Y subunit A-33.2e-2252.03Show/hide
Query:  YQDPYYGGMMA--FYGHQPLGYP-MVGAPHARMPLPIEIAQ-DPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRF--
        Y DP+YGG++A  +    P   P MV     R+PLP E+ + DPVFVNAKQY  I+RRRQ RAK EA+ KLI+ARKPYLHESRH HA++R RGSGGRF  
Subjt:  YQDPYYGGMMA--FYGHQPLGYP-MVGAPHARMPLPIEIAQ-DPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRF--

Query:  -----AKKDEANENEMHSDKANE
              + ++A   E   DK  +
Subjt:  -----AKKDEANENEMHSDKANE

Q945M9 Nuclear transcription factor Y subunit A-91.3e-4747.06Show/hide
Query:  MQSKSET-NNQLESDPNGAPSTSL-YYEPWWR-GIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRL
        M SKS++  N+++S+ +G  S+S+    PW R     N       G  +S S +L       ESN  +S SN D     + V KE Q T SP SAG Y  
Subjt:  MQSKSET-NNQLESDPNGAPSTSL-YYEPWWR-GIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRL

Query:  DAQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA
          Q+  H   T P  H          +LVGH++  A SNPYQDPYY G+M  YGH PLG+ P  G PH+RMPLP E+AQ+PVFVNAKQYQ ILRRRQARA
Subjt:  DAQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA

Query:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMN
        KAE EKKLIK+RKPYLHESRHQHA+RR RG+GGRFAKK     ++  +++ +      +  S   +   + N
Subjt:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMN

Q9LXV5 Nuclear transcription factor Y subunit A-11.1e-5148.29Show/hide
Query:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD
        MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GSESND  S S +  LN E D   K+ QA  S  S  ++ ++
Subjt:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD

Query:  AQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA
               + ++  MH +   Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKA
Subjt:  AQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA

Query:  EAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ
        E E+K+I+ RKPYLHESRH+HA+RR R SGGRFAKK E    E    +  E G   N  GSEQ
Subjt:  EAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ

Arabidopsis top hitse value%identityAlignment
AT3G20910.1 nuclear factor Y, subunit A99.3e-4947.06Show/hide
Query:  MQSKSET-NNQLESDPNGAPSTSL-YYEPWWR-GIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRL
        M SKS++  N+++S+ +G  S+S+    PW R     N       G  +S S +L       ESN  +S SN D     + V KE Q T SP SAG Y  
Subjt:  MQSKSET-NNQLESDPNGAPSTSL-YYEPWWR-GIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRL

Query:  DAQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA
          Q+  H   T P  H          +LVGH++  A SNPYQDPYY G+M  YGH PLG+ P  G PH+RMPLP E+AQ+PVFVNAKQYQ ILRRRQARA
Subjt:  DAQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACA-SNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA

Query:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMN
        KAE EKKLIK+RKPYLHESRHQHA+RR RG+GGRFAKK     ++  +++ +      +  S   +   + N
Subjt:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMN

AT5G12840.1 nuclear factor Y, subunit A18.1e-5348.29Show/hide
Query:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD
        MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GSESND  S S +  LN E D   K+ QA  S  S  ++ ++
Subjt:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD

Query:  AQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA
               + ++  MH +   Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKA
Subjt:  AQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA

Query:  EAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ
        E E+K+I+ RKPYLHESRH+HA+RR R SGGRFAKK E    E    +  E G   N  GSEQ
Subjt:  EAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ

AT5G12840.2 nuclear factor Y, subunit A15.3e-5249.43Show/hide
Query:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD
        MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GSESND  S S +  LN E D   K+ QA      A S R D
Subjt:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD

Query:  AQKMQHVSSTLPA--MHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA
           M+     L    MH +   Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARA
Subjt:  AQKMQHVSSTLPA--MHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA

Query:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ
        KAE E+K+I+ RKPYLHESRH+HA+RR R SGGRFAKK E    E    +  E G   N  GSEQ
Subjt:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ

AT5G12840.3 nuclear factor Y, subunit A18.1e-5348.29Show/hide
Query:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD
        MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GSESND  S S +  LN E D   K+ QA  S  S  ++ ++
Subjt:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD

Query:  AQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA
               + ++  MH +   Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARAKA
Subjt:  AQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKA

Query:  EAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ
        E E+K+I+ RKPYLHESRH+HA+RR R SGGRFAKK E    E    +  E G   N  GSEQ
Subjt:  EAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ

AT5G12840.4 nuclear factor Y, subunit A15.3e-5249.43Show/hide
Query:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD
        MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GSESND  S S +  LN E D   K+ QA      A S R D
Subjt:  MQSKSETNNQLE-SDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNND-LNDEEDDVTKEVQATGSPHSAGSYRLD

Query:  AQKMQHVSSTLPA--MHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA
           M+     L    MH +   Q    ELVGH IAC  NPYQDPYYGG+M  YGHQ LG+ P +G P  R  LP+++AQ+PV+VNAKQY+GILRRR+ARA
Subjt:  AQKMQHVSSTLPA--MHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGY-PMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARA

Query:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ
        KAE E+K+I+ RKPYLHESRH+HA+RR R SGGRFAKK E    E    +  E G   N  GSEQ
Subjt:  KAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLN-DGSEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGAATCTGATCCAAATGGTGCCCCGTCCACAAGTCTCTATTACGAACCCTGGTGGCGTGGTATTGGGTACAATCCTAT
TCCCTTGCCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGTCAGTCTGTGTCTAATAATGATTTAAACG
ATGAAGAAGATGATGTTACCAAAGAAGTGCAAGCTACTGGATCCCCACATTCTGCTGGAAGCTACAGACTGGATGCTCAAAAGATGCAGCATGTTTCATCCACTCTGCCA
GCTATGCACGGTGAATGTCCGACGCAGTCTACACAACTCGAACTTGTTGGCCACTCTATTGCATGTGCATCAAATCCATATCAGGACCCATATTATGGAGGAATGATGGC
TTTTTATGGTCACCAGCCCTTGGGATATCCTATGGTTGGAGCACCGCATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCTAAGCAGT
ACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTCCATGAATCTAGACACCAGCATGCCATA
AGAAGGACGAGGGGTAGTGGAGGGCGTTTTGCCAAGAAAGACGAAGCTAATGAAAACGAGATGCATTCTGACAAAGCAAACGAGAGTGGTTACTGCCTAAACGACGGTTC
CGAACAGCGAAATGGAAGTTCATCGATGAACAAGGCCTCTCAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGAATCTGATCCAAATGGTGCCCCGTCCACAAGTCTCTATTACGAACCCTGGTGGCGTGGTATTGGGTACAATCCTAT
TCCCTTGCCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGTCAGTCTGTGTCTAATAATGATTTAAACG
ATGAAGAAGATGATGTTACCAAAGAAGTGCAAGCTACTGGATCCCCACATTCTGCTGGAAGCTACAGACTGGATGCTCAAAAGATGCAGCATGTTTCATCCACTCTGCCA
GCTATGCACGGTGAATGTCCGACGCAGTCTACACAACTCGAACTTGTTGGCCACTCTATTGCATGTGCATCAAATCCATATCAGGACCCATATTATGGAGGAATGATGGC
TTTTTATGGTCACCAGCCCTTGGGATATCCTATGGTTGGAGCACCGCATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCTAAGCAGT
ACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTCCATGAATCTAGACACCAGCATGCCATA
AGAAGGACGAGGGGTAGTGGAGGGCGTTTTGCCAAGAAAGACGAAGCTAATGAAAACGAGATGCATTCTGACAAAGCAAACGAGAGTGGTTACTGCCTAAACGACGGTTC
CGAACAGCGAAATGGAAGTTCATCGATGAACAAGGCCTCTCAG
Protein sequenceShow/hide protein sequence
MQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQKMQHVSSTLP
AMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAI
RRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ