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MS005477 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005477
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1030:162345..162473
RNA-Seq ExpressionMS005477
SyntenyMS005477
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8612177.1 hypothetical protein MANES_S095214v8, partial [Manihot esculenta]2.3e-0461.76Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL
        FKWYKDTF + +F+R D  N +WK+KF+AGLP L
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL

KAG8634183.1 hypothetical protein MANES_17G018812v8, partial [Manihot esculenta]2.3e-0461.76Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL
        FKWYKDTF + +F+R D  N +WK+KF+AGLP L
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL

KAG8650609.1 hypothetical protein MANES_07G055364v8 [Manihot esculenta]1.0e-0457.5Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKLAERIFI
        FKWYKDTF + +F+R D  N +WK KF+AGLP L   I I
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKLAERIFI

QHO08363.1 uncharacterized protein DS421_14g471910 [Arachis hypogaea]1.4e-0452.08Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLP-----KLAERIFIHLV
        FKWYKDTFL ++F R D +   WK+KF+AGLP     K+ E+I  HL+
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLP-----KLAERIFIHLV

XP_023751366.1 uncharacterized protein LOC111899755 [Lactuca sativa]7.9e-0566.67Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL-AERI
        F+WYKD FLAK+ +R D  N LWK+KFI+GLP L AERI
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL-AERI

TrEMBL top hitse value%identityAlignment
A0A2C9U9B5 CCHC-type domain-containing protein1.1e-0461.76Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL
        FKWYKDTF + +F+R D  N +WK+KF+AGLP L
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL

A0A2C9VDJ2 CCHC-type domain-containing protein (Fragment)1.1e-0461.76Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL
        FKWYKDTF + +F+R D  N +WK+KF+AGLP L
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL

A0A2C9WHG9 CCHC-type domain-containing protein (Fragment)1.1e-0461.76Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL
        FKWYKDTF + +F+R D  N +WK+KF+AGLP L
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL

A0A2G5CH67 CCHC-type domain-containing protein1.9e-0461.76Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL
        F+WYKD F+AK+ VR D  N  WK+KFI+GLP+L
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKL

A0A6B9VB04 Uncharacterized protein1.9e-0455.56Show/hide
Query:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKLAE
        F+WYKDTFL +++ R D +   WK+KF+AGLPK  E
Subjt:  FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKLAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCAAATGGTACAAAGATACTTTCCTCGCAAAACTCTTTGTCCGAACGGACGACAGGAACTTGTTATGGAAACAGAAGTTCATTGCAGGCCTTCCGAAACTCGCAGAACG
GATCTTCATCCACCTTGTC
mRNA sequenceShow/hide mRNA sequence
TTCAAATGGTACAAAGATACTTTCCTCGCAAAACTCTTTGTCCGAACGGACGACAGGAACTTGTTATGGAAACAGAAGTTCATTGCAGGCCTTCCGAAACTCGCAGAACG
GATCTTCATCCACCTTGTC
Protein sequenceShow/hide protein sequence
FKWYKDTFLAKLFVRTDDRNLLWKQKFIAGLPKLAERIFIHLV