; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005478 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005478
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolyprotein
Genome locationscaffold1030:164902..165660
RNA-Seq ExpressionMS005478
SyntenyMS005478
Gene Ontology termsNA
InterPro domainsIPR028919 - Viral movement protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588193.1 hypothetical protein SDJN03_16758, partial [Cucurbita argyrosperma subsp. sororia]3.4e-7160.32Show/hide
Query:  ASCCSKSSSHPLDTEEYDQVGKGK-DVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDE-AACLNLLCGSDFWVHNSSHTSSWHLQNEYHS
        +SC   +SSH LDT+EYD V KGK D+LTWNIPTLPTSKIY+T LF  + FS NSL++TK+G   L      LNL+   D           WHLQN+Y +
Subjt:  ASCCSKSSSHPLDTEEYDQVGKGK-DVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDE-AACLNLLCGSDFWVHNSSHTSSWHLQNEYHS

Query:  IHVGMVQIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCY
        IH+GMVQIGVK LTR PLNA +L+ LRDAR   LQDSLL MVE +L  GP+YFNVFPNI ESLS P RL DLL L+ KVR+FE LP  P +IV MYRVCY
Subjt:  IHVGMVQIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCY

Query:  KVVKPGIQTRGLLESP-NGRTVFF---VDTNNNVLDQKVTVWDKVQLPQNWP
        KV+KPG++TR LL++P NGRT+FF    +T  N  +Q VTVW++VQLP+NWP
Subjt:  KVVKPGIQTRGLLESP-NGRTVFF---VDTNNNVLDQKVTVWDKVQLPQNWP

KAG6590198.1 hypothetical protein SDJN03_15621, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3538.66Show/hide
Query:  MSKLFKCASCCSK-SSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIY----RTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTS
        MS  F+  SC SK    H L+ EEY  V KG +++ W +P +P  K+Y    + KLF  S     S IR  +GQ             G  F ++  + +S
Subjt:  MSKLFKCASCCSK-SSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIY----RTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTS

Query:  SWHLQNEYHSIHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVP
               Y  +++G+VQIGVKT+TRK P NA++++ +RD R  K++DS++AMVE+ L  GP YFNVFPN+  SL + + ++++L + V V+ F+ L    
Subjt:  SWHLQNEYHSIHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVP

Query:  DDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFFVDTNNNVLD----------QKVTVWDKVQLPQNWP
        + IV   R CYK+ +       LLESP G+TVFF       L+          QKVT WD+VQLP NWP
Subjt:  DDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFFVDTNNNVLD----------QKVTVWDKVQLPQNWP

KAG6656908.1 hypothetical protein CIPAW_04G053800 [Carya illinoinensis]4.3e-2632.18Show/hide
Query:  MSKLFKCASCCSKSSSHPLDT-----EEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGS-PFSPNSLIRTKKGQCCL-DEAACLNLLCGSDFWVHNSSH
        M+ LFK     + + + PL+T     E+Y  +   +++  W IP +P ++IY+   F+    F  N  I+T +    L ++   L LL         +  
Subjt:  MSKLFKCASCCSKSSSHPLDT-----EEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGS-PFSPNSLIRTKKGQCCL-DEAACLNLLCGSDFWVHNSSH

Query:  TSSWHLQNEYHSIHVGMVQIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAV
            H + +Y  IH+G+VQ+ VK LTR  LNA++L+ LRD R     DSLL MVE+SL  GPVYFN +PN + SL   + +L  L L++K   +  +   
Subjt:  TSSWHLQNEYHSIHVGMVQIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAV

Query:  PDDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFFVDT--NNNVLDQKVTVWDKVQLPQNW
           +  +YR+ YK++K  ++ + L+ SP G T+    +  N+++   K   W++V LP  W
Subjt:  PDDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFFVDT--NNNVLDQKVTVWDKVQLPQNW

KGN66493.1 hypothetical protein Csa_007053 [Cucumis sativus]5.1e-3539.25Show/hide
Query:  MSKLFKCASCCSKS--SSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIY---RTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTS
        MS  FK  SC SK+    H L+ EEY  V KGK ++ W +P +P  KIY   R   F   P   +  IRT +GQ             G  F ++  + +S
Subjt:  MSKLFKCASCCSKS--SSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIY---RTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTS

Query:  SWHLQ--NEYHSIHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPA
            +  + ++++++G+VQIGVKTLT+K P NA++++ LRD R  KL+DSLLA+VE+ L  GP YFNVFPNI  SL   + + ++L + V V+  + +P 
Subjt:  SWHLQ--NEYHSIHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPA

Query:  VPDDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFF----VDTNNNVLDQKVTVWDKVQLPQNWP
            IV   R CYK+ +    +  L+ESP G+TVFF     + +++ + QKVT+W++VQLP +WP
Subjt:  VPDDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFF----VDTNNNVLDQKVTVWDKVQLPQNWP

KGN66494.1 hypothetical protein Csa_006902 [Cucumis sativus]8.7e-3538.93Show/hide
Query:  CASCCSKSSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQC-CLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHS
        C S      SH LD+EEY  + KGK++L W IP +PT+KIY++  F    F  +  I+TK+    C + +    L+ G+           ++  +  Y  
Subjt:  CASCCSKSSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQC-CLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHS

Query:  IHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVC
        +++GM+QIGVKTLT K P NA++++ + D R    +DS+L +VE+ L  GP++FN+FPNIT  +  P +LL+  +L   V+ FE LP     I  M+R C
Subjt:  IHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVC

Query:  YKVVKPGIQTRGLLESPNGRTVFFVDT--NNNVLDQKVTVWDKV
        YK+    + T  L+ESP G+TVFF     N+ V DQKV+ WD+V
Subjt:  YKVVKPGIQTRGLLESPNGRTVFFVDT--NNNVLDQKVTVWDKV

TrEMBL top hitse value%identityAlignment
A0A0A0LXM3 Uncharacterized protein2.5e-3539.25Show/hide
Query:  MSKLFKCASCCSKS--SSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIY---RTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTS
        MS  FK  SC SK+    H L+ EEY  V KGK ++ W +P +P  KIY   R   F   P   +  IRT +GQ             G  F ++  + +S
Subjt:  MSKLFKCASCCSKS--SSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIY---RTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTS

Query:  SWHLQ--NEYHSIHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPA
            +  + ++++++G+VQIGVKTLT+K P NA++++ LRD R  KL+DSLLA+VE+ L  GP YFNVFPNI  SL   + + ++L + V V+  + +P 
Subjt:  SWHLQ--NEYHSIHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPA

Query:  VPDDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFF----VDTNNNVLDQKVTVWDKVQLPQNWP
            IV   R CYK+ +    +  L+ESP G+TVFF     + +++ + QKVT+W++VQLP +WP
Subjt:  VPDDIVFMYRVCYKVVKPGIQTRGLLESPNGRTVFF----VDTNNNVLDQKVTVWDKVQLPQNWP

A0A0A0LZS0 Uncharacterized protein4.2e-3538.93Show/hide
Query:  CASCCSKSSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQC-CLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHS
        C S      SH LD+EEY  + KGK++L W IP +PT+KIY++  F    F  +  I+TK+    C + +    L+ G+           ++  +  Y  
Subjt:  CASCCSKSSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQC-CLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHS

Query:  IHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVC
        +++GM+QIGVKTLT K P NA++++ + D R    +DS+L +VE+ L  GP++FN+FPNIT  +  P +LL+  +L   V+ FE LP     I  M+R C
Subjt:  IHVGMVQIGVKTLTRK-PLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVC

Query:  YKVVKPGIQTRGLLESPNGRTVFFVDT--NNNVLDQKVTVWDKV
        YK+    + T  L+ESP G+TVFF     N+ V DQKV+ WD+V
Subjt:  YKVVKPGIQTRGLLESPNGRTVFFVDT--NNNVLDQKVTVWDKV

A0A6B9V7U7 Polyprotein1.5e-2434.16Show/hide
Query:  SSSHPLDTEE--YDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGMV
        S  H +  EE  ++ + +  D   W IP +P  ++Y   + + +    + +I+T +    L   +      G +F  H  +  S       Y  +H+G V
Subjt:  SSSHPLDTEE--YDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGMV

Query:  QIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPG
        Q+ VK L R+ LNA++LM LRD R    QDSL+  VETSL HGPVYFN FPN T SL     +LD L L++++    N+         +YR+ YKV+   
Subjt:  QIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPG

Query:  IQTRGLLESPNGRTVFFVD--TNNNVLDQKVTVWDKVQLPQNW
          +R LL+S +  T  FV   T  NV+  ++  WD++ LPQ+W
Subjt:  IQTRGLLESPNGRTVFFVD--TNNNVLDQKVTVWDKVQLPQNW

A0A6B9VA18 Polyprotein2.0e-2434.16Show/hide
Query:  SSSHPLDTEE--YDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGMV
        S  H +  EE  ++ + +  D   W IP +P  ++Y   + + +    + +I+T +    L   +      G +F  H  +  S       Y  +H+G V
Subjt:  SSSHPLDTEE--YDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGMV

Query:  QIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPG
        Q+ VK L R+ LNA++LM LRD R    QDSL+  VETSL HGPVYFN FPN T SL     +LD L L++++    N+         +YR+ YKV+   
Subjt:  QIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPG

Query:  IQTRGLLESPNGRTVFFVD--TNNNVLDQKVTVWDKVQLPQNW
          +R LL+S +  T  FV   T  NV+  ++  WD++ LPQ+W
Subjt:  IQTRGLLESPNGRTVFFVD--TNNNVLDQKVTVWDKVQLPQNW

A0A6B9VCB3 Polyprotein2.0e-2434.16Show/hide
Query:  SSSHPLDTEE--YDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGMV
        S  H +  EE  ++ + +  D   W IP +P  ++Y   + + +    + +I+T +    L   +      G +F  H  +  S       Y  +H+G V
Subjt:  SSSHPLDTEE--YDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGMV

Query:  QIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPG
        Q+ VK L R+ LNA++LM LRD R    QDSL+  VETSL HGPVYFN FPN T SL     +LD L L++++    N+         +YR+ YKV+   
Subjt:  QIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPG

Query:  IQTRGLLESPNGRTVFFVD--TNNNVLDQKVTVWDKVQLPQNW
          +R LL+S +  T  FV   T  NV+  ++  WD++ LPQ+W
Subjt:  IQTRGLLESPNGRTVFFVD--TNNNVLDQKVTVWDKVQLPQNW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAGCTTTTCAAGTGTGCAAGTTGTTGCTCCAAATCATCGTCTCATCCTCTAGACACCGAAGAATACGACCAAGTGGGGAAAGGCAAAGATGTTCTAACATGGAA
CATCCCCACTCTCCCCACTTCCAAAATCTACAGAACAAAACTCTTCAATGGCTCTCCTTTTTCCCCAAACTCCCTCATCAGAACCAAGAAGGGTCAATGCTGCCTCGACG
AAGCTGCATGCCTAAACTTGTTATGTGGAAGTGACTTCTGGGTCCACAATAGCAGCCACACATCGTCATGGCACCTCCAAAACGAGTACCACTCGATCCATGTCGGAATG
GTCCAAATTGGAGTCAAAACCTTAACAAGAAAGCCCTTGAATGCCACGCTTCTTATGTCCCTTCGCGACGCCAGACAAGGCAAACTACAGGACTCTCTTCTGGCCATGGT
GGAGACCAGTTTGAGCCACGGTCCTGTCTACTTCAATGTCTTTCCCAACATTACGGAGTCGCTGTCCAAACCAGCTCGGCTGTTGGATTTGCTGTTGCTGGATGTCAAAG
TTAGGGACTTTGAGAACCTGCCCGCTGTCCCCGATGACATTGTTTTTATGTATCGAGTTTGTTATAAGGTCGTAAAACCTGGGATTCAGACGCGAGGTTTGCTTGAGAGT
CCCAATGGGAGGACTGTTTTCTTCGTGGACACTAATAATAATGTTTTGGATCAAAAAGTTACAGTGTGGGATAAAGTTCAGCTGCCCCAAAACTGGCCG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAGCTTTTCAAGTGTGCAAGTTGTTGCTCCAAATCATCGTCTCATCCTCTAGACACCGAAGAATACGACCAAGTGGGGAAAGGCAAAGATGTTCTAACATGGAA
CATCCCCACTCTCCCCACTTCCAAAATCTACAGAACAAAACTCTTCAATGGCTCTCCTTTTTCCCCAAACTCCCTCATCAGAACCAAGAAGGGTCAATGCTGCCTCGACG
AAGCTGCATGCCTAAACTTGTTATGTGGAAGTGACTTCTGGGTCCACAATAGCAGCCACACATCGTCATGGCACCTCCAAAACGAGTACCACTCGATCCATGTCGGAATG
GTCCAAATTGGAGTCAAAACCTTAACAAGAAAGCCCTTGAATGCCACGCTTCTTATGTCCCTTCGCGACGCCAGACAAGGCAAACTACAGGACTCTCTTCTGGCCATGGT
GGAGACCAGTTTGAGCCACGGTCCTGTCTACTTCAATGTCTTTCCCAACATTACGGAGTCGCTGTCCAAACCAGCTCGGCTGTTGGATTTGCTGTTGCTGGATGTCAAAG
TTAGGGACTTTGAGAACCTGCCCGCTGTCCCCGATGACATTGTTTTTATGTATCGAGTTTGTTATAAGGTCGTAAAACCTGGGATTCAGACGCGAGGTTTGCTTGAGAGT
CCCAATGGGAGGACTGTTTTCTTCGTGGACACTAATAATAATGTTTTGGATCAAAAAGTTACAGTGTGGGATAAAGTTCAGCTGCCCCAAAACTGGCCG
Protein sequenceShow/hide protein sequence
MSKLFKCASCCSKSSSHPLDTEEYDQVGKGKDVLTWNIPTLPTSKIYRTKLFNGSPFSPNSLIRTKKGQCCLDEAACLNLLCGSDFWVHNSSHTSSWHLQNEYHSIHVGM
VQIGVKTLTRKPLNATLLMSLRDARQGKLQDSLLAMVETSLSHGPVYFNVFPNITESLSKPARLLDLLLLDVKVRDFENLPAVPDDIVFMYRVCYKVVKPGIQTRGLLES
PNGRTVFFVDTNNNVLDQKVTVWDKVQLPQNWP