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MS005497 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005497
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold1030:384004..384190
RNA-Seq ExpressionMS005497
SyntenyMS005497
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13067.1 putative F-box protein [Cucumis melo var. makuwa]4.2e-0750Show/hide
Query:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        LTCKFDP + IS  +   +   +CVDF P + EG++SV  FSFHP F +  + ISIIN+  GLL
Subjt:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

XP_004135796.1 putative F-box protein At1g46984 [Cucumis sativus]2.2e-1155.88Show/hide
Query:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        +CKFDP ISIS+LFFA  Y       HCV+F P+H EG+S+VA F+FHP+  S   RI+IINS  GL+
Subjt:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

XP_008439950.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]4.2e-0750Show/hide
Query:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        LTCKFDP + IS  +   +   +CVDF P + EG++SV  FSFHP F +  + ISIIN+  GLL
Subjt:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

XP_008450717.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]1.1e-1054.41Show/hide
Query:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        +CKFDP  SI +LFFA  Y       HCV+F P+H EG+S VA F+FHP+F S  +RI+IINS  GL+
Subjt:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]3.0e-1360.87Show/hide
Query:  LTCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        L+CKFDP ISISNLFFAH Y       HCVD  P+H EG+S+VA F+FHPN  S   +ISIINS  GL+
Subjt:  LTCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

TrEMBL top hitse value%identityAlignment
A0A0A0M1M5 F-box domain-containing protein1.0e-1155.88Show/hide
Query:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        +CKFDP ISIS+LFFA  Y       HCV+F P+H EG+S+VA F+FHP+  S   RI+IINS  GL+
Subjt:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

A0A1S3B0Q6 putative F-box protein At3g211202.0e-0750Show/hide
Query:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        LTCKFDP + IS  +   +   +CVDF P + EG++SV  FSFHP F +  + ISIIN+  GLL
Subjt:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

A0A1S3BQV8 putative F-box protein At3g211205.2e-1154.41Show/hide
Query:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        +CKFDP  SI +LFFA  Y       HCV+F P+H EG+S VA F+FHP+F S  +RI+IINS  GL+
Subjt:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

A0A5D3CIX9 Putative F-box protein5.2e-1154.41Show/hide
Query:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        +CKFDP  SI +LFFA  Y       HCV+F P+H EG+S VA F+FHP+F S  +RI+IINS  GL+
Subjt:  TCKFDPLISISNLFFAHIY-------HCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

A0A5D3CM94 Putative F-box protein2.0e-0750Show/hide
Query:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL
        LTCKFDP + IS  +   +   +CVDF P + EG++SV  FSFHP F +  + ISIIN+  GLL
Subjt:  LTCKFDPLISISNLFF--AHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAACTTGTAAGTTTGATCCTTTAATCTCAATTTCCAACCTCTTTTTTGCCCATATTTATCATTGTGTGGACTTTGGTCCTAAACATCCGGAAGGGATTAGCAGTGTTGC
TAAATTTAGTTTTCATCCTAACTTTTTCTCCAAGATCACCCGTATCTCAATCATCAATTCCTCGAGAGGACTCCTC
mRNA sequenceShow/hide mRNA sequence
TTAACTTGTAAGTTTGATCCTTTAATCTCAATTTCCAACCTCTTTTTTGCCCATATTTATCATTGTGTGGACTTTGGTCCTAAACATCCGGAAGGGATTAGCAGTGTTGC
TAAATTTAGTTTTCATCCTAACTTTTTCTCCAAGATCACCCGTATCTCAATCATCAATTCCTCGAGAGGACTCCTC
Protein sequenceShow/hide protein sequence
LTCKFDPLISISNLFFAHIYHCVDFGPKHPEGISSVAKFSFHPNFFSKITRISIINSSRGLL