CuGenDBv2

Gene ID	MS005605
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase III subunit rpc6-like
Genome location	scaffold254:230814..231510
RNA-Seq Expression	MS005605
Synteny	MS005605
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR007832 - RNA polymerase Rpc34 IPR016049 - RNA polymerase Rpc34-like IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK13079.1 DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]

4.2e-84

67.62

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Query:  MSKSQVPSTSSHKGKRQDSISRSGA----LSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D  +++ +    + QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQDSISRSGA----LSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+   
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  -KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
         KGEPK GA+AS+PCGVCPRI+ C+ NG++SP TCVYY KWLDF
Subjt:  -KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

TYK19400.1 DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]

2.9e-85

69.39

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Query:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D     S  GAL  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C    
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
          KGEPK+GA+AS+PCGVCPRI++C+ NG++SP TCVYY KWLDF
Subjt:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

XP_008448982.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo]

2.9e-85

69.39

Show/hide

Query:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D     S  GAL  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C    
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
          KGEPK+GA+AS+PCGVCPRI++C+ NG++SP TCVYY KWLDF
Subjt:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]

1.1e-84

69.17

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Query:  MSKSQVPSTSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTG
        MS+SQ P  SS K KR DS S    +  EKVL+DLICSKQS GI   D+KRET   +S+VTKSLK+LQAKG+IKL++H+QN+GKK YLSKDFE +K LTG
Subjt:  MSKSQVPSTSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTG

Query:  GEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGE
        G WY +GKLD+EYI TLKG C RMI K KV T+EGIV+ FK+SGASKV    EQI+EIVN+LVLD+EVMEV+S+GSGEFDF+P+GKICYKC A    KGE
Subjt:  GEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGE

Query:  PKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
        PK GA+AS+PCGVCPRIS C+ NGV+SPRTCVYY KWLDF
Subjt:  PKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

XP_038905079.1 DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]

1.9e-84

69.39

Show/hide

Query:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKS+ P  SS K KR D     S  GAL  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQA+GL+K++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++KVIT+EGIVE FK+SGA KV    EQIEEIVN+LVLD++VMEV+SSG GEF+F+PVGKICYK C    
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
          KGEPK GA+ S+PCGVCPRI+ C++NG++SP TCVYYAKWL+F
Subjt:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like

1.4e-85

69.39

Show/hide

Query:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D     S  GAL  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C    
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
          KGEPK+GA+AS+PCGVCPRI++C+ NG++SP TCVYY KWLDF
Subjt:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

A0A5A7UBI4 DNA-directed RNA polymerase III subunit RPC6-like

2.0e-84

67.62

Show/hide

Query:  MSKSQVPSTSSHKGKRQDSISRSGA----LSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D  +++ +    + QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQDSISRSGA----LSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+   
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  -KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
         KGEPK GA+AS+PCGVCPRI+ C+ NG++SP TCVYY KWLDF
Subjt:  -KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

A0A5D3CS47 DNA-directed RNA polymerase III subunit RPC6-like

2.0e-84

67.62

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Query:  MSKSQVPSTSSHKGKRQDSISRSGA----LSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D  +++ +    + QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQDSISRSGA----LSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++V EV+SSG GEF+F+P+GKICYK C+   
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  -KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
         KGEPK GA+AS+PCGVCPRI+ C+ NG++SP TCVYY KWLDF
Subjt:  -KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

A0A5D3D7H7 DNA-directed RNA polymerase III subunit rpc6-like

1.4e-85

69.39

Show/hide

Query:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK
        MSKSQ P  SS K KR D     S  GAL  QEKVL+DLICSKQS GICTFDMKRET   ESVVTKSLKSLQ KGLIK++QH+QN+GKK YLS DFE AK
Subjt:  MSKSQVPSTSSHKGKRQD---SISRSGAL-SQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAK

Query:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---
         LTGG WYRDG+LD++YI TLK VC RMI ++K++T+EGIVE FK+SGA KV    EQIEEIVN+LVLD++VMEV+SSG GEF+F+P+GKICYK C    
Subjt:  ALTGGEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA---

Query:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
          KGEPK+GA+AS+PCGVCPRI++C+ NG++SP TCVYY KWLDF
Subjt:  --KGEPKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X1

5.3e-85

69.17

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Query:  MSKSQVPSTSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTG
        MS+SQ P  SS K KR DS S    +  EKVL+DLICSKQS GI   D+KRET   +S+VTKSLK+LQAKG+IKL++H+QN+GKK YLSKDFE +K LTG
Subjt:  MSKSQVPSTSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTG

Query:  GEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGE
        G WY +GKLD+EYI TLKG C RMI K KV T+EGIV+ FK+SGASKV    EQI+EIVN+LVLD+EVMEV+S+GSGEFDF+P+GKICYKC A    KGE
Subjt:  GEWYRDGKLDQEYIETLKGVC-RMISKRKVITMEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCA----KGE

Query:  PKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
        PK GA+AS+PCGVCPRIS C+ NGV+SPRTCVYY KWLDF
Subjt:  PKMGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

SwissProt top hits

e value

%identity

Alignment

O94553 Probable DNA-directed RNA polymerase III subunit rpc6

2.0e-17

29.07

Show/hide

Query:  EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIETLKGVCRMISKRK
        E++++  I +  + GI    +   TNL  SVV + LKSL++K L+K I+  +N  +K+Y+  D   +  LTGG W+ D +LD E+IE LK V       K
Subjt:  EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIETLKGVCRMISKRK

Query:  VI---------------------TMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGEPKMGAIASVPCG
                               T   I  + + +  +KV+     +  +V+ L+ D +V E RS G+            Y+        + A    PCG
Subjt:  VI---------------------TMEGIVEYFKRSGASKVE----QIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGEPKMGAIASVPCG

Query:  VCPRISFCSQNGVVSPRTCVYYAKWLD
         CP    C  N  V+P TC Y  KWL+
Subjt:  VCPRISFCSQNGVVSPRTCVYYAKWLD

Q2T9S3 DNA-directed RNA polymerase III subunit RPC6

1.0e-21

28.15

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Query:  QDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIET
        Q++    G+ +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK ++      KK+Y+  + +  +++TGG WY D   + E++E 
Subjt:  QDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIET

Query:  LKGVCRMISKRKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGEPK
        L   C    + K  T                     + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      Y+  +   P 
Subjt:  LKGVCRMISKRKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGEPK

Query:  MGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
         G + + PCG+CP    C + G +SP  C+Y  +WL+F
Subjt:  MGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc6

4.0e-21

27.39

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Query:  STSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDG
        +TS  +   +D     G   ++ +++ LI +  + G  T ++K  +   +  +TK LK+L+++ LIK ++  Q+  KK+Y+  + E ++ +TGG+ Y D 
Subjt:  STSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDG

Query:  KLDQEYIETLK-GVCRMISKRKVITMEGIVEYFKR------SGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGEPKMGAIASV
          D +YI+ +K  +   +  +  + +  I+ Y ++      S +   E I+ +VN+++ D ++ E+R +  G       G I YK      P +    ++
Subjt:  KLDQEYIETLK-GVCRMISKRKVITMEGIVEYFKR------SGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGEPKMGAIASV

Query:  PCGVCPRISFCSQNGVVSPRTCVYYAKWLD
        PCG CP    CS NG+VSP+ CVY+ ++L+
Subjt:  PCGVCPRISFCSQNGVVSPRTCVYYAKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC6

2.3e-21

28.15

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Query:  QDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIET
        Q++    G+ +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK ++      KK+Y+  + +  +++TGG WY D   + E++E 
Subjt:  QDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIET

Query:  LKGVCRMISKRKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGEPK
        L   C    + K  T                     + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      Y+      P 
Subjt:  LKGVCRMISKRKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGEPK

Query:  MGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
         G + + PCG+CP    C + G +SP  C+Y  +WL+F
Subjt:  MGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC6

3.1e-21

28.15

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Query:  QDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIET
        Q++    G+ +QEK+++ +I    + GI + D++ ++NL  + + K LK+L++K LIK ++      KK+Y+  + +  +++TGG WY D   + E++E 
Subjt:  QDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLDQEYIET

Query:  LKGVCRMISKRKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGEPK
        L   C    + K  T                     + +Y    G SKV    E IE I+N+L+ D +V M + ++  G    V      Y+      P 
Subjt:  LKGVCRMISKRKVIT------------------MEGIVEYFKRSGASKV----EQIEEIVNSLVLDHEV-MEVRSSGSGEFDFVPVGKICYKCCAKGEPK

Query:  MGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF
         G + + PCG+CP    C + G +SP  C+Y  +WL+F
Subjt:  MGAIASVPCGVCPRISFCSQNGVVSPRTCVYYAKWLDF

Arabidopsis top hits

e value

%identity

Alignment

AT5G23710.1 DNA binding;DNA-directed RNA polymerases

1.3e-51

46.05

Show/hide

Query:  KGKRQDSISRSGALSQ--EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLD
        K KR D  S  G L++  EK L DLI   Q  G   F++KRE  +  ++VT+ + SL+ K LIK + +  N+G K YL+ +FE    LTGGEWY DG LD
Subjt:  KGKRQDSISRSGALSQ--EKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLD

Query:  QEYIETLKGVCRMISKR---KVITMEGIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAK----GEPKMGAIASVPCG
           IE LK  C MI +R   +V+T+E +  YF +     V+Q +EI+ +L+LD+ +MEV+S+G  EF    +G++CY+   K    GEP+ GA AS+PCG
Subjt:  QEYIETLKGVCRMISKR---KVITMEGIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAK----GEPKMGAIASVPCG

Query:  VCPRISFCSQNGVVSPRTCVYYAKWLDF
        VCP I+ CS +GV+SP TCVY+ KWLDF
Subjt:  VCPRISFCSQNGVVSPRTCVYYAKWLDF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGCAAATCACAAGTGCCTTCAACTTCATCACACAAAGGAAAAAGACAAGACTCGATCAGTAGATCAGGAGCCTTATCGCAAGAAAAAGTGCTCCACGACCTAATTTG
CAGCAAGCAGAGCGCGGGGATTTGCACATTCGACATGAAAAGAGAGACAAATTTGACCGAAAGCGTGGTAACCAAATCGCTCAAGTCACTCCAAGCGAAAGGCCTAATAA
AATTAATCCAACACCATCAGAACAGAGGGAAGAAATTGTACCTGTCGAAAGATTTCGAAGCGGCAAAGGCATTAACCGGCGGCGAATGGTACCGCGACGGGAAGCTGGAT
CAAGAATACATCGAAACTCTTAAAGGAGTGTGTAGAATGATTTCGAAGAGGAAGGTGATTACGATGGAAGGAATTGTGGAGTATTTCAAGAGGAGTGGAGCTTCGAAAGT
GGAGCAAATTGAAGAGATTGTGAATTCATTGGTGCTGGACCATGAAGTGATGGAGGTGAGGAGCAGTGGATCTGGAGAATTTGATTTTGTTCCTGTAGGGAAGATTTGTT
ACAAATGCTGTGCCAAAGGAGAGCCCAAAATGGGAGCAATAGCTTCTGTTCCTTGTGGAGTCTGTCCACGGATTAGTTTTTGTTCGCAAAACGGCGTCGTTTCGCCTCGG
ACTTGTGTCTACTACGCCAAGTGGCTAGATTTT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSKSQVPSTSSHKGKRQDSISRSGALSQEKVLHDLICSKQSAGICTFDMKRETNLTESVVTKSLKSLQAKGLIKLIQHHQNRGKKLYLSKDFEAAKALTGGEWYRDGKLD
QEYIETLKGVCRMISKRKVITMEGIVEYFKRSGASKVEQIEEIVNSLVLDHEVMEVRSSGSGEFDFVPVGKICYKCCAKGEPKMGAIASVPCGVCPRISFCSQNGVVSPR
TCVYYAKWLDF

MS005605 (gene) of Bitter gourd (TR) v1 genome